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9 protocols using interleukin 4 (il 4)

1

Dendritic Cell Differentiation and Maturation

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Monocyte isolation and DC differentiation were performed as described previously.4 (link) Briefly, monocytes were obtained using the adherence method, where PBMCs were plated in adherent plastic plates (Sarstedt, Nümbrecht, Germany) in medium (X-Vivo 15 medium, Lonza, Basel, Switzerland) supplemented with 5% human serum, 2 mM L-glutamine and 1 mM sodium pyruvate (Thermo Fisher Scientific, Waltham, MA, USA), 1,000 U/mL (100 ng/mL) IL-4, and 800 U/mL (50 ng/mL) Granulocyte-macrophage colony-stimulating factor (GM-CSF) (both from STEMCELL Technologies) and incubated in a CO2, 37°C incubator for 7 days. On day 4, the medium was replaced with fresh medium supplemented with IL-4 and GM-CSF. On day 7, DCs were matured with maturation medium containing 1,000 U/mL (100 ng/mL) IL-4, 800 U/mL (50 ng/mL) GM-CSF, 10 ng/mL tumor necrosis factor alpha (TNF-α) (STEMCELL Technologies), 1 μg/mL PGE2 (Sigma), 10 ng/mL IL-1β (Feldan, Quebec City, QC, Canada), and 100 ng/mL IL-6 (Miltenyi Biotec, Bergisch Gladbach, Germany) and loaded with the desired peptide (1 μg/mL LMP2426–434, [CLGGLLTMV] or 1 μg/mL WT137–45 [VLDFAPPGA], both from JPT Peptides (Berlin, Germany). Last, DC medium was supplemented with interferon γ (IFN-γ; 1,000U/mL, Feldan) for the last 24 h of maturation.
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2

PBMC Isolation and Monocyte-Derived Dendritic Cell Generation

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Peripheral blood mononuclear cells (PBMCs) were isolated using lymphoprep and SepMate (StemCell Technologies). Monocytes were isolated from PBMCs using EasySep™ Mouse Monocyte Isolation Kit. 500,000 monocytes/ml were cultured in complete RPMI with FBS supplemented with 50 ng/ml GM-CSF (Peprotech) plus 25 ng/ml IL-4 (StemCell Technologies) in 24-well plates for 3 days.
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3

Isolation and Polarization of M1/M2 Macrophages

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Thirty ml of peripheral blood was withdrawn from three groups of CAD patients. Peripheral blood mononuclear cells (PBMCs) were isolated by collecting the buffy coat generated after Lymphoprep™ (Axis Shield, Oslo, Norway) density centrifugation. Mojosort™ magnetic cell separation system (Biolegend, San Diego, California) was employed to further isolate monocytes from the pooled PBMCs. Next, monocytes were re-suspended (1 × 106/ml) in RPMI1640, with stable glutamine (Capricorn Scientific, Germany) and seeded into 25 cm2 tissue culture flask (SPL Life Sciences, Korea). Monocytes were allowed to adhere at 37 °C, 5% CO2 for 3 h. Non-adherent cells were washed off using RPMI 1640 with stable glutamine media. The adherent monocytes were cultured for 5 days in RPMI 1640 with stable glutamine media supplemented with 10% heat-inactivated fetal bovine serum (Capricorn Scientific, Germany), 1% penicillin-streptomycin (Nacalai Tesque, Japan), and 20 ng/ml recombinant GMCSF (Miltenyi Biotec, Germany) for M1 macrophage or 10 ng/ml recombinant MCSF (Gold Biotechnology, Missouri) to generate M2 macrophages. After day 5, M1 macrophages were polarized with 10 ng/ml LPS (Nacalai Tesque, Japan) and 20 ng/ml IFN-γ (Miltenyi Biotec, Germany) for 2 days. Meanwhile, 20 ng/ml IL-4 and 20 ng/ml IL-13 (Stemcell Technologies, Canada) were added into culture media to polarize M2 macrophages.
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4

Polarizing and Conditioning RAW 264.7 Cells

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RAW 264.7 cells were harvested (by cell scraper) and seeded at 25 × 105 cells/T25 flask. After 24h, cells were polarized in 5 ml serum free DMEM as follows: For M0 polarization, serum free media (SFM) alone was added. For M1 polarization, 20 ng/ml interferon gamma + 100ng/ml lipopolysaccharide (Stemcell Technologies, Vancouver) was added and for M2 polarization 20 ng/ml of IL-4, and 20 ng/ml IL-10 (Stemcell Technologies) was added. Cells were polarized for 24 h, thoroughly washed with PBS then 5 ml of fresh SFM was added. After another 24 hrs, the conditioned media (CM) was filtered (0.22 μm filter) and stored at −20°C until needed.
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5

Generation of Stable Cell Lines for Knockdown

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HeLa R19, A375, and Hs683 cells were maintained in high-glucose DMEM supplemented with 0.1 mM nonessential amino acids (Invitrogen) and 10% fetal bovine serum (FBS; Sigma). M059J cells were grown in DMEM:F12 (Invitrogen) supplemented with 0.05 mM nonessential amino acids and 10% FBS. To generate stable cell lines with dox-inducible knockdown of genes of interest, A375 cells were first transfected with BstZ17I-digested pcDNA6/TR (Invitrogen), the tetracycline repressor expression vector, and grown under blasticidin (5 μg/mL; Invitrogen) selection. blasticidin-resistant clones were screened for dox-inducible RLuc expression after transient transfection with pcDNA5/TO/FRT/Luc (38 (link)), and the clone with the lowest RLuc basal level:highest induction ratio was selected and expanded as a host cell line. Stable cell lines with dox-inducible knockdown of ADAR, DHX9, DHX58 (LGP2), or EIF2AK2 (PKR) were generated with shRNA-expressing vectors (see below); G418-resistant (600 μg/mL; Invitrogen) clones were screened by immunoblot of lysates from control/dox-induced cells (1 μg/mL; 48–72 h) for the highest level of target protein depletion. MdDCs were generated from leukopak-derived PBMCs (Stemcell Tech) by allowing monocytes to adhere (1 h) at 37°C in AIM-V media (Thermo Fisher), followed by 6 days of culture in 50 μg/mL GMCSF (R&D systems) and 20 ng/mL IL-4 (Stemcell Tech).
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6

Macrophage Differentiation from THP-1 Cells

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To induce macrophage differentiation, 4 × 10e5 low-passage Thp1, a human monocytic leukemia cell line (CSL), were seeded onto 12-well plate in RPMI GlutaMAX (Invitrogen) supplemented with 10% FBS (VWR) and 1% penicillin/streptomycin (Sigma-Aldrich), and treated with 162 nmol/L Phorbol 12-Myristate 13-Acetate (Sigma-Aldrich) and 20 ng/mL IL4 (StemCell), according to the previously published protocol (40 (link)). Follistatin (FST, Peprotech) was used at 50 ng/mL. Thp1 cells were maintained at 37°C in humidified conditions with 5% CO2 and were confirmed as negative for Mycoplasma prior to use in assays.
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7

Monocyte-Derived Dendritic Cell Differentiation and Maturation

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Isolated PBMCs were re-suspended in RPMI 1640 supplemented with 10% FBS, 100 U/mL penicillin, 100 μg/mL streptomycin, 0.25 μg/mL amphotericin B, and 2 mM GlutaMAX (Gibco) and seeded in 25-cm2 cultural flasks (Corning) at a concentration of 6∗106 cell/mL. After 2 h, the unbound cells were removed, and the media were changed to fresh, supplemented with growth factors—IL-4 (100 ng/mL) and GM-CSF (50 ng/mL) (STEMCELL Technologies), and then cultivated for 6 days with a change of half of the media volume every 2 days. After 6 days, the full medium volume was changed to a fresh portion with bacterial lipopolysaccharide (10 μg/mL) and cultivated for 24 h for DC maturation. MoDCs were analyzed for the expression of CD11c, CD80, and HLA-DR on the membrane surface using the NovoCyte flow cytometer (ACEA Biosciences).
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8

Generating Dendritic Cells from Bone Marrow

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Dendritic cells were generated from bone marrow isolated from femurs and tibia from indicated mice. 2×106 bone marrow cells were cultured in media containing GM-CSF (25 ng/ml; Stem Cell Technologies, Vancouver, Canada) and IL-4 (5 ng/ml; Stem Cell Technologies) for 7 days[18 (link)]. On day 3, cultures were replenished with media containing GM-CSF and IL-4. On Day 6, immature DCs were stimulated with LPS (1μg/ml; Sigma-Aldrich, St. Louis, MO, USA) for 24 hrs. DCs were cultured at 37°C, 5% CO2 in RPMI 1640 (Invitrogen, Waltham, MA, USA) supplemented with 10% FBS, 100IU/mL penicillin, 100 μg/ml streptomycin, 50uM β-mercaptoethanol, and 2mM L-glutamine.
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9

Human Monocyte Differentiation to M1 and M2 Macrophages

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Fresh blood samples from healthy donors were collected, and PBMCs were isolated by density gradient centrifugation using SepMate-50 tubes (STEMCELL Technologies). Isolation of monocytes was performed using the classical monocyte isolation kit (Miltenyi Biotec) according to the manufacture’s protocol. After isolation of CD14+ monocytes, cells were cultured in ImmunoCult-SF Macrophage Medium (STEMCELL Technologies) along with 5 μg/mL recombinant human recombinant macrophage colony stimulating factor (M-CSF, STEMCELL Technologies). Monocytes were then cultured at 37°C in a humidified incubator with 5% CO2 until day 4. For M1 differentiation, 10 ng/mL LPS (MilliporeSigma) and 50 ng/mL IFNγ (STEMCELL Technologies) were added to the culture. For M2 differentiation, 10 ng/mL IL4 (STEMCELL Technologies) was added to the culture according to the manufacture’s protocol. Macrophages were harvested on day 6 and used in the following assays as indicated.
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