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Alexa fluor 647 donkey anti rabbit

Manufactured by Thermo Fisher Scientific
Sourced in United States

Alexa Fluor 647 donkey anti-rabbit is a fluorescently labeled secondary antibody used for detection and visualization in various immunological techniques. It is generated by immunizing donkeys with rabbit IgG and conjugating the resulting antibodies with the Alexa Fluor 647 dye. This product can be used to detect and localize rabbit primary antibodies in applications such as immunofluorescence, flow cytometry, and Western blotting.

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59 protocols using alexa fluor 647 donkey anti rabbit

1

Immunofluorescence Staining of Cell Markers

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Primary Abs were NF-κB p65 rabbit monoclonal antibody (mAb) (1:400; Cell Signaling Technology, #8242), ICAM-1 mouse mAb (1:400; Santa Cruz Biotechnology, sc-18908), claudin-5 rabbit mAb (1:1000; Abcam, ab53765) or mouse mAb (1:50; Life Technologies, #187364), GRP78 mouse mAb (1:100; Santa Cruz Biotechnology, sc-376768) or rabbit polyclonal (1:100; Santa Cruz Biotechnology, sc-13968), albumin goat polyclonal (1:60; Abcam, ab19194), rabbit polyclonal fluorescein isothiocyanate (FITC)–fibrinogen (1:60; Dako, 2022-01), AQP4 rabbit polyclonal (1:200; Santa Cruz Biotechnology, sc-20812), rabbit polyclonal VE-cadherin Ab (1:1000; Abcam, ab33168), and PECAM mouse mAb (1:100; R&D Systems, BBA7). Secondary Abs were Alexa Fluor 488 goat anti-rabbit IgG, Alexa Fluor 488 goat anti-human IgG, Alexa Fluor 594 goat anti-rabbit IgG, Alexa Fluor 594 goat anti-mouse IgG, Alexa Fluor 594 donkey anti-goat, Alexa Fluor 488 donkey anti-human, or Alexa Fluor 647 donkey anti-rabbit (1:400; Life Technologies). Human IgG pools, individual patient IgGs, and rAbs also were used as primary Abs to determine the pattern of IgG binding to cells.
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2

Immunofluorescence of 15-LOX and 5-LOX in Macrophages

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Immunofluorescence microscopy was carried out with slight modifications of procedures reported in (12 (link)). M2 macrophages (1 × 104 cells) were seeded on gelatin-coated glass coverslips in a 12-well plate and incubated in normoxia or hypoxia for 24 hours before fixation with 4% paraformaldehyde (15 min) and staining. Cells were then fixed with 4% paraformaldehyde (15 min) followed by incubation in 0.25% Triton X-100 (Sigma-Aldrich) containing Background Sniper (10 min, room temperature) to reduce background staining. Cells were then incubated with rhodamine phalloidin (Life Technologies) (30 min) for actin visualization, followed by incubation with mouse monoclonal anti-15-LOX (1:100) and rabbit monoclonal anti–5-LOX (1:100) (Abcam) overnight at 4°C. Coverslips were washed and labeled with the following secondary antibodies: Alexa Fluor 488 donkey anti-mouse (1:1000) and Alexa Fluor 647 donkey anti-rabbit (1:1000) (Life Technologies). To visualize the nuclei, coverslips were mounted with VECTASHIELD (Vector Laboratories) and examined by Zeiss LSM 800 with an Airyscan confocal system on a Zeiss Axio Observer Z1 inverted microscope equipped with an Axiocam 503 Monochrome Camera.
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3

Immunostaining of Brain Slices and Cells

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Briefly, brain slices and N27 cells were incubated in a blocking solution (2% FBS and 0.3% Triton X-100 in PBS) for 2 h at room temperature. Brain slices were incubated with the primary antibodies in a blocking solution for 2 overnights (mouse anti-CtBP1,1:1000, BD Biosciences, cat no. 612042; mouse anti-CtBP2, 1:1000, BD Biosciences, cat no. 612044; rat anti-CD11b, 1:1000, Serotec; rabbit anti-GFAP, 1:200, DAKO; rabbit anti-NeuN, 1:500, Cell Signaling; rabbit anti-TH, 1:1000, Santa Cruz Biotechnology), while N27 cells were incubated for 1 overnight (mouse anti-CtBP1 and mouse anti-CtBP2, 1:200) at 4 °C. Afterward, tissue and cells were incubated for 2 h at room temperature with the following appropriated secondary antibodies: Alexa Fluor 594 donkey anti-mouse (Abcam), Alexa Fluor 488 donkey anti-rat (Life Technologies) and Alexa Fluor 647 donkey anti-rabbit (Life Technologies) (1:1000 for tissues and 1:200 for cells). Lastly, sections were rinsed with PBS and mounted in Fluoroshield Mounting Medium (Abcam). Images were acquired under the magnification of 40 × using a Zeiss inverted confocal microscopy (Axiobserver Z1, Zeiss).
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4

Quantifying Surface ASTN1 Variants

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Transfected HEK 293T cells were harvested in 1 mM EDTA in PBS. The surface fraction of Venus-linked ASTN1 variants was labeled with rabbit anti-GFP (1:5,000; Invitrogen) for 20 min at 4 °C followed by Alexa Fluor 647 donkey anti-rabbit (1:5,000; Life Technologies) for 25 min at 4 °C. Flow cytometry analysis was carried out on a BD Accuri C6 flow cytometer system (BD Biosciences) using 488-nm and 640-nm lasers as described in SI Appendix.
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5

Visualizing FUS Protein Localization

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N2A cells or primary cortical neurons were seeded on gelatin or poly-d-lysine hydrobromide-coated glass coverslips. Twenty-four hours after the transfection with EGFP-FUS, cells were rinsed with 1× PBS, fixed with 4% formaldehyde in 1× PBS, and permeabilized with 0.25% Triton X-100 in 1× PBS. Primary fibroblast cells were cultured, fixed, and permeabilized similarly as above. The primary antibodies used in this study were mouse anti-FUS (sc-47711; Santa Cruz Biotechnology, Santa Cruz, CA), rabbit anti-G3BP1 (13057-2-AP; Proteintech), and goat anti-TIA1 (sc-1751; Santa Cruz). The secondary antibodies were Alexa Fluor 488 donkey anti-mouse (A-21202; Life Technologies), Alexa Fluor 647 donkey anti-rabbit (A-31573; Life Technologies), and Alexa Fluor 568 donkey anti-goat (A-11057; Life Technologies). The samples were mounted using Vectashield Mounting Medium (Vector Laboratories, Burlingame, CA). Images were acquired using a Nikon A1 confocal microscope with a 60× objective.
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6

Immunostaining of Drosophila Adult Hearts

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Adult hearts with pericardial nephrocytes from 7-day-old females were dissected in artificial Drosophila haemolymph according to Selma-Soriano et al. (2018a) (link), fixed with 4% paraformaldehyde (PFA) in PBS for 20 min and permeabilized by washing three times with PBS containing 0.3% Triton X-100 (PBS-T) for 10 min. Then, hearts were blocked in PBS-T containing 0.5% bovine serum albumin for 30 min at room temperature and incubated with the corresponding primary antibody (1:100) overnight at 4°C. Primary antibodies used were anti-Rph (Abcam, ab3338; with 50% of homology), anti-Hrs (DSHB, AB 2722114), anti-Rab3 and anti-Rab27 (BD Bioscience, 610379 and 558532, respectively) and anti-Klf15 (Ivy et al., 2015 (link)) (Abcam, ab22851; with 59% of homology). After three washes with PBS-T, the secondary antibodies (1:200), AlexaFluor-647 donkey anti-rabbit (Life Technologies, A31573), anti-mouse biotinylated (Sigma-Aldrich, B7264) and anti-rabbit biotinylated (Sigma-Aldrich, B8895) were incubated for 2 h at room temperature. Hearts with pericardial nephrocytes were then incubated with ABC solution (ABC kit, VECTASTAIN) for 30 min at room temperature, followed by washes and incubation with streptavidin-Texas Red (Vector Laboratories, 1:500). All images were taken using an LSM 800 confocal microscope (Zeiss) and were processed using ZEN software.
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7

Comprehensive Antibody Characterization Protocol

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The following antibodies were used: GFP (ab13970; Abcam), GFP (ChIP; ab290) CycA2 (#sc-751; Santa Cruz) (used for immunofluorescence), CycA2 (#4656; Cell Signalling), CycA2 (HPA020626), PLK1 (ab14210; Abcam), affinity purified mouse anti pT210-PLK1 (clone K50-483; Becton Dickinson), affinity purified rabbit anti-Bora (Bruinsma et al, 2014 (link)), CDK1 (sc-54; Santa Cruz and #9116; Cell Signalling), CDK2 (sc-163; Santa Cruz and #2564; Cell Signalling), GAPDH (G9545; Sigma-Aldrich), H2B (ab1790; Abcam), β-Tubulin (#2128S; Cell Signalling), PCNA (HPA030522), KAP1 (A300-274A), H3 (ab1791), Alexa Fluor 488–goat anti-chicken (#A11039; Life Technologies), and Alexa Fluor 647–donkey anti-rabbit (#A31537; Life Technologies).
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8

Immunostaining of Rabphilin in Murine Hearts

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Adult hearts from 7-day-old females were dissected in PBS 1 X according to Selma-Soriano and Chakraborty38 , fixed with 4% paraformaldehyde for 20 min and permeabilized by PBS containing 0.3% Triton-X (PBS-T) for 10 min, 3 times. Hearts were blocked in PBS-T containing 0.5% BSA for 30 min at room temperature and incubated with human anti-Rabphilin (1:200) (Abcam, ab3338). After 3 washes with PBS-T, the AlexaFluor-647 donkey anti-rabbit (1:1000) (Life Technologies, A31573) was incubated for 2 h at room temperature. The images were taken with an LSM 800 confocal microscope (Zeiss) using 40 × oil objective.
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9

Localization of PIEZO2 in N2A cells

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N2A cells were co-transfected with PIEZO2-HA-IRES-GFP or IDRdel constructs and with a plasmid encoding the red fluorescent protein mScarlet fused to a farnesylation signal sequence in its C-terminus to target it to the plasma membrane. Three days after transfection, cells were washed once with PBS and fixed with 4% PFA for 10 min at room temperature, washed 3 times for 5 min with PBS and permeabilised for 1 h at room temperature (permeabilization buffer: 2,5% donkey serum (Sigma), 1% BSA, 0.1% Triton X-100, 0.05% Tween-20, in PBS). Samples were then incubated overnight at 4 °C with a 1:500 dilution of rabbit anti-HA antibody (Thermo Fisher Scientific) in PBS 1% BSA. After 3 washes of 5 min, cells were incubated for 1 h with a 1:1000 dilution of AlexaFluor-647 donkey anti-rabbit (Life technologies, diluted in PBS 1% BSA) and washed 3 more times. Coverslips were mounted on slides with FluoProbe mounting media that contain DAPI (Interchim). Confocal images were acquired with a SP8 confocal microscope (Leica) and a 63x oil-immersion objective. Images were analyzed offline with Fiji (v2.3.0/1.53f).
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10

Adipose Tissue Immune Cell Visualization

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Paraffin sections of white adipose tissue (5μm thickness) were stained with rat anti mouse Ly6G (1:100; BD Biosciences) and rabbit anti mouse Cathelicidin (1:100; Innovagen). Subsequently, samples were incubated with Alexa fluor 647 donkey anti rabbit (1:500; Invitrogen), donkey anti rat 549 (1:500; Invitrogen), and the DNA-binding dye DAPI (Invitrogen). Co-localization of these markers was determined by confocal microscopy (SP-8 X, Leica). In addition paraffin sections of white adipose tissue were stained with hematoxylin and eosin. Adipocyte size was determined of 100 adipocytes per mouse by use of ImageJ.
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