The largest database of trusted experimental protocols

6 protocols using mca4739

1

Western Blot Analysis of Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from cultured cells or frozen clamped liver tissue that had been stored at −80 °C. The whole tissues were homogenized in Triton lysis buffer (TLB) supplemented with protease inhibitors (Complete Mini 11 836 153 001; Roche, Indianapolis, IN, USA). Protein concentration was measured with a Pierce BCA Protein Assay Kit (Thermo Scientific, Waltham, MA, USA). Equal amounts of total protein were fractionated by polyacrylamide gel electrophoresis and then transferred to polyvinylidene difluoride (PVDF) membranes (Millipore, Darmstadt, Germany). Primary antibodies against α-SMA (A5228; Sigma Aldrich, St. Louis, MO, USA) and GAPDH (MCA4739; AbDSerotec, Oxford, UK) were used in this experiment. The membranes were developed by chemiluminescence (ATTO Corporation, Tokyo, Japan). The blots obtained from three independent experiments were scanned and a region of interest (ROI) around the band of interest was defined. The band intensities were calculated by using CS analyzer 4 program (ATTO Corporation.)
+ Open protocol
+ Expand
2

Protein Extraction and Western Blot Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total protein was extracted from frozen liver tissues and cultured cells. Samples were homogenized in Triton lysis buffer (TLB) supplemented with protease inhibitors (Roche). Equal amount of total protein were fractionated by SDS-PAGE on 15% tris-tricine gel as described by Hermann [25 (link)] and transferred to polyvinylidene difluoride (PVDF) membranes. Other detailed procedures were conducted as previously described [5 (link)]. Primary antibodies against Tβ4 (A9520, Immunodiagnostik AG, Bensheim, Germany) and GAPDH (MCA4739, AbDSerotec, Raleigh, NC) were used in this experiment. Membranes were developed by chemiluminescence (ATTO Corporation). The blots obtained from 3 independent experiments were scanned and an region of interest (ROI) around the band of interest was defined. Band intensities were calculated by using CS Analyzer Version 2.0 (ATTO Corporation).
+ Open protocol
+ Expand
3

Immunoblotting of Cellular Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue samples were homogenized in NP-40 lysis buffer using a tissue grind pestle (Kimble/Chase) or with a bead ruptor 12 (Omni International) to obtain protein lysates. These were separated by SDS–PAGE, transferred to polyvinylidene difluoride membrane and analysed by immunoblotting. Membranes were probed with the following antibodies: anti-p-AKT (#4060), anti-AKT (#4685), anti-p-GSK-3 (#8566), anti-GSK-3 (#5676), anti-p-ERK (#4377) and anti-ERK (#4695; Cell Signaling), anti-Caspase-8 (Enzo #ALX-804-447), anti-RIPK3 mouse (IMGENEX #IMG-5523), anti-RIPK3 human (#ab56164), anti-phospho-MLKL human (#ab187091) and mouse (#ab196436; Abcam) and anti-GAPDH (ABD Serotec #MCA4739). All primary antibodies were used at the dilution 1:2,000. As secondary antibodies, anti-rabbit-horseradish peroxidase (HRP; #NA934V) and anti-mouse-HRP (#NA931V; Amersham) and anti-rat-HRP (Santa Cruz #sa2956) were used. All secondary antibodies were used at the dilution 1:5,000. Unedited scans of all western blot images are shown in Supplementary Fig. 11.
+ Open protocol
+ Expand
4

Western Blot Analysis of Liver Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Tissue of snap frozen livers was lysed in ice cold lysis buffer (Supplementary Table S4). The protein lysat was heat denaturated for 5 min. at 95°C in double-strength sodium dodecyl sulfate sample buffer containing dithiothreitol before resolution in 10% SDS-PAGE. For primary antibody incubation membranes were probed with anti-α-SMA (ab32575, Abcam, Cambridge, United Kingdom), and anti-GAPDH (MCA4739, AbD serotec, Hercules, CA, United States) antibodies. As secondary antibodies HRP-linked anti-rabbit immunoglobulin G (7074S, Cell signaling, Frankfurt, Germany) and HRP-linked anti-rat (559286, BD Pharmingen, Heidelberg, Germany) were used. The antigen-antibody complexes were visualized using the ECL chemiluminescence kit (GE Healthcare, Buckinghamshire, United Kingdom).
+ Open protocol
+ Expand
5

Polyclonal Antibody Production Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
For production of polyclonal antibodies, glutathione S-transferase (GST)-fusion proteins containing the specific antigenic regions of seven candidate proteins were expressed in Escherichia coli BL21 and affinity purified with glutathione Sepharose 4B (GE Healthcare). The recombinant proteins were used as antigens for producing rabbit polyclonal antisera. The antibodies were affinity purified using the appropriate proteins and an AminoLink immobilization kit (Pierce). The following commercially available antibodies were also used: a mouse monoclonal antibody against ADAM2 (1/1000, MAB19292) from Millipore; an antibody against α-tubulin (1/1000, T6199) from Sigma-Aldrich; and an antibody against GAPDH (1/1000, MCA4739) from Bio-Rad. As secondary antibodies for Western blot analysis, we used horseradish peroxidase (HRP)-conjugated anti-rabbit or anti-mouse IgG (Jackson ImmunoResearch).
+ Open protocol
+ Expand
6

Antibody-based Detection of ASFV Proteins

Check if the same lab product or an alternative is used in the 5 most similar protocols
Rabbit antisera specific for ASFV CP204L, B646L, E183L (56 (link)), and A137R (our unpublished data) proteins were used at dilutions of 1:20,000 for immunoblotting. The primary antibodies used for immunoblotting included rabbit anti-GFP (Chromotek), rabbit anti-VPS39 (PA5-21104; Thermo Fisher), mouse anti-tubulin (B-5-1-2; Sigma-Aldrich), and mouse anti-GAPDH (glyceraldehyde-3-phosphate dehydrogenase; MCA4739; Bio-Rad). The secondary antibodies used were peroxidase-conjugated goat anti-mouse and anti-rabbit IgG (Jackson ImmunoResearch). The additional primary antibodies used for immunofluorescence were mouse anti-vimentin (MA1-06908; Thermo Fisher), rabbit anti-Rab7 (PA5-52369; Thermo Fisher), mouse anti-LAMP-1 (MCA2315GA; Bio-Rad), and rabbit anti-VPS11 (PA5-21854; Thermo Scientific). The secondary antibodies were Alexa Fluor 647-conjugated goat anti-rabbit IgG (H+L) and goat anti-mouse IgG (H+L) (Invitrogen).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!