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102 protocols using prism version 4

1

Intracerebral Inoculation of Hamsters with Prion Strains

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Male Syrian hamsters (Harlan-Sprague-Dawley, Indianapolis, IN) were intracerebrally (i.c.) inoculated with 25 μl of an equal mixture of 1% w/v uninfected brain homogenate with either 1% w/v of 139H, ME7H, DY, or equal mixtures of a 1% w/v of DY and 139H or DY and ME7H-infected brain homogenates. PMCAsi generated uninfected brain homogenate, DY, 139H, or DY and 139H mixed material was diluted 1:100 and 25 μl was i.c. inoculated into hamsters. Hamsters were observed three times per week for the onset of clinical signs of prion disease and the incubation period was calculated as the number of days between inoculation and onset of clinical signs. Two tail Student’s T test (Prism Version 4.03, for windows; GraphPad Software Inc., La Jolla, CA) with a p value of 0.01 was used to compare incubation periods [55 (link)]. Animals were weighed once per week until the onset of clinical disease and weights were compared using ANCOVA analysis (Prism Version 4.03, for windows; GraphPad Software Inc., La Jolla, CA) with a p value of 0.05. Animals were sacrificed by CO2 asphyxiation and brain tissue were collected, flash frozen and stored at -80°C.
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2

Statistically Robust Analysis of Data

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All the data were presented as means ± standard deviation (S.D.), and statistically analyzed using unpaired Student t-test (two-sided) for two groups of data or one way ANOVA (analysis of variance) (PRISM Version 4.0; GraphPad Software, Inc., San Diego, CA) followed by post hoc conservative Tukey’s test for three or more groups of data to minimize type I error. Two way ANOVA (PRISM Version 4.0; GraphPad Software, Inc., San Diego, CA) followed by Bonferroni post-test was used for comparing the subgroups of data from mice with or without NAC treatment to minimize type I error. Differences were considered statistically significant when a two-tailed P < 0.05.
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3

Homotaurine Enhances Memory Outcomes

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StatView (SAS, San Francisco, CA, USA) and GraphPad (Prism Version 4, San Diego, CA, USA) software were used for statistical analyses. Because the data do not follow normal distribution (as showed in Figure 1), non-parametric statistical tests were used. In particular, the differences between continuous variables at baseline and after 12 months of homotaurine supplementation were evaluated using Wilcoxon Signed Ranks test. Kendall Rank Correlation assessed relationship between IL-18 values and memory (i.e., I-RLT primacy and recency effects) performances. P-values less than 0.05 were considered statistically significant.
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4

Unpaired t-tests and Z-tests Analysis

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Unpaired t tests and graphs were produced using Prism version 4 (GraphPad). Z-tests were completed in excel. P < 0.05 was considered significant.
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5

Survival Analysis and Immunohistochemical Correlations

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Kaplan-Meier curves were assembled in Prism version 4 (GraphPad software). Mean survival times were estimated from Kaplan-Meier curves. Comparisons between survival curves were made by using the logrank test. Correlations between immunohistochemical scores were calculated using Pearson's correlation co-efficient and significance assessed using with Student's t-test. All calculations were performed using SPSS version 21 (IBM).
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6

Statistical Analysis of Experimental Data

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Data from four independent experiments are reported as the mean ± SEM. Statistical analyses were performed using unpaired two‐tailed Student’s t‐tests with prism, version 4 (GraphPad Software Inc., San Diego, CA, USA). P < 0.05 was considered statistically significant.
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7

Comparative Statistical Analysis of Biomarkers

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The variables were tested for normality by Shapiro–Wilk test. For normally distributed variables, a repeated-measures t-test was used and data were expressed as mean ± standard deviation. When the variables were not normally distributed, Wilcoxon signed-rank test was applied and data were presented as median (min-max). A 2-tailed p-value <0.05 was considered statistically significant. (Graphpad prism, version 4). Spearman’s correlation coefficient is a statistical measure of the strength of a monotonic relationship between paired data.
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8

Comparative Analyses of Biochemical Markers

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The results were expressed as means ± standard deviation (SD). Statistical significance of difference between groups was analyzed by one-way analysis of variance (ANOVA) followed by Tukey’s multiple comparison test using statistical software (Prism,version 4; GraphPad Software Inc., San Diego, CA, USA).
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9

Scintillation Proximity Assay for 11β-HSD1/2

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The inhibitory activities of the compounds on human or mouse 11β-HSD1 and 11β-HSD2 were determined using the scintillation proximity assay (SPA). The full-length cDNAs of human or murine11β-HSD1 and 11β-HSD2 were isolated from the cDNA libraries provided by NIH Mammalian Gene Collection. The cDNAs were cloned into pcDNA3 expression vectors. HEK-293 cells were transfected with the pcDNA3-derived expression plasmid and selected by cultivation in the presence of 700 μg/ml of G418. The microsomal fraction overexpressing 11β-HSD1 or 11β-HSD2 was prepared from the HEK-293 cells, which were stably transfected with 11β-HSD1 or 11β-HSD2. The fraction was then used as the enzyme source for SPA. Microsomes containing human or mouse 11β-HSD1 were incubated with NADPH and [3H] cortisone. The product, [3H] cortisol, was specifically captured by a monoclonal antibody coupled to protein A-coated SPA beads. The 11β-HSD2 screening was performed by incubating 11β-HSD2 microsomes with [3H] cortisol and NAD + and monitoring substrate disappearance. All tests were done twice with glycyrrhizinic acid as a positive control. IC50 (X + SD, n = 2) values were calculated by using Prism Version 4 (GraphPad Software, SanDiego, CA).
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10

Mouse Survival Curve Analysis

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Data from at least 3 independent experiments are shown as the mean ± SEM. Mouse survival curves were constructed using the Kaplan-Meier product limit estimator and log rank (Mantel-Cox) test. Unless otherwise noted, the differences between 2 groups were analyzed by unpaired Student t test. Analyses were performed with Prism version 4.0 (GraphPad Software, San Diego, CA). All statistical tests were 2-sided and P < .05 was considered statistically significant.
All authors had access to the study data and had reviewed and approved the final article.
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