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7 protocols using anti pdcd4

1

Protein Expression Analysis in Colorectal Cancer

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Protein from the treated and untreated HCT116 and LOVO cells was extracted by RIPA (Beyotime, Nantong, China). The protein lysates were separated by SDS-PAGE and then transferred onto PVDF membranes. ECL chromogenic substrate was used for densitometry quantification after incubating specific antibodies at 4 °C for 12 h. Protein detection was performed using rabbit monoclonal anti-CCND1 (Abcam, Cambridge, UK, ab134175), anti-CDK4 (Abcam, ab108357), anti-P21 (Abcam, ab109520), anti-casepase3 (CST, #14220), anti-PARP (Proteintech, Rosemont, IL, USA, 13371-1-AP), anti-PDCD4 (Abcam, ab80590), anti-Vimentin (CST, #5741), anti-N-cadherin (Abcam, ab76011), anti-E-cadherin (Abcam, 76011), anti-METTL3 (Proteintech, 15073-1-AP), anti-IGF2BP2 (Proteintech, 11601-1-AP),anti-FLAG (Proteintech, 20543-1-AP), anti-pAKT (CST, #4060), anti-AKT (CST, #9272), anti-PI3K (CST, #4249), anti-pPI3K (CST, #4228). GAPDH (Affinity, West Bridgeford, UK, AF7021) was applied as the internal control.
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2

Western Blot Analysis of Autophagy Markers

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Cells were lysed in radio immunoprecipitation assay (RIPA) buffer (Yeasen, Shanghai, China), and protein was collected by centrifugation (4°C, 12,000 × g, 10 min). Protein concentrations were determined by bicinchoninic acid (BCA) protein assay kit (Yeasen, Shanghai, China). Proteins were separated by 15% SDS-PAGE and subsequently transferred onto polyvinylidene fluoride (PVDF) membranes. Membranes were blocked with 5% non-fat milk in Tris-buffered saline Tween 20 (TBST) for 2 h with gentle shaking at room temperature, then incubated overnight with the following primary antibodies: anti-LC3B (1:1,000; Abcam, Cambridge, MA, USA), anti-SQSTM1 (1:1,000; Abcam, Cambridge, MA, USA), anti-PDCD4 (1:1,000; Abcam, Cambridge, MA, USA), and anti-β-tubulin (1:6,000; Abcam, Cambridge, MA, USA). The membranes were washed three times with TBST for 10 min and incubated for 1 h with secondary antibodies (1:2,000, Proteintech, Rosemont, IL, USA) at room temperature. Protein bands were scanned using a Tanon 4600SF (Tanon, Shanghai, China). The density of protein bands was quantified with Image-Pro Plus 6.0 software, and the ratio of target protein to β-tubulin, which reflects the changes in expression levels, was calculated.
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3

Western Blot Protein Analysis

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Total protein was isolated from the cell lines and then resolved by 10% SDS-PAGE. Isolated proteins were transferred using a polyvinylidene fluoride (PVDF) membrane (Millipore, Billerica, MA). The membrane was incubated with a primary antibody, followed by incubation with secondary antibodies. The main antibodies included anti-PDCD4 (1:2000; Abcam of Cambridge University, Britain) and anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH) (1:1000, Abcam).
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4

Comprehensive Protein Quantification Protocol

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Blots were probed using the following primary antibodies: anti-eIF4E (Santa Cruz Biotechnology, Santa Cruz, CA, USA; sc-9976), anti-eIF4A1 (Abcam, Cambridge, UK; ab31217), anti-eIF4B (Epitomics, Burlingame, CA, USA; 2232-1), anti-PDCD4 (Abcam, ab80590), anti-actin (Abcam, ab6276), CCND3 (Cell Signaling, Beverly, MA, USA; 2936), PI3KCA (Cell Signaling, 4249), CDC25B (Cell Signaling, 9525), NPM1 (Cell Signaling, 3542), GNAS (Abcam, ab83735), RPL27A (Abcam, ab74731), hnRNPA1 (Abcam, ab4791) and RPS25 (GeneTex, Irvine, CA, USA; 101526). Suitable secondary antibodies were used for chemiluminescence detection. Samples were analyzed from at least two independent experiments.
Films were scanned on an ImageScanner III using LabScan software (GE Healthcare) and proteins were quantified using ImageQuant software (GE Healthcare), or for Licor analysis, IRDye 680LT-conjugated secondary antibody (LI-COR Biosciences, Lincoln, NE, USA) was used, followed by scanning on the Odyssey system (LI-COR Biosciences).
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5

Exosome Protein Expression Analysis

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The PDCD4 protein expression was assessed by western blotting and its level was normalized to GAPDH. In addition, CD63, TSG101, and Alix were used as markers and internal controls for exosomes. Total proteins were extracted from cells or exosomes in radioimmunoprecipitation assay (RIPA) buffer with freshly added protease inhibitor. Then, total lysates were separated by 10% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore). After blocking with 2% bovine serum albumin (BSA) for 1 h, the membranes were incubated overnight at 4°C with anti-PDCD4 (1:2,000, Abcam), anti-CD63 (1:1,000, Santa Cruz Biotechnology), anti-TSG101 (1:1,000, Santa Cruz Biotechnology), anti-Alix (1:1,000, Santa Cruz Biotechnology), and anti-GAPDH (1:3,000, Abcam) antibodies, respectively. Then, the membranes were incubated with the corresponding secondary antibodies for 2 h and visualized with an enhanced chemiluminescence system kit (Millipore, Bedford, MA, USA) according to the manufacturer’s protocol.
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6

Immunoblotting Analysis of Key Signaling Proteins

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All proteins were prepared as described (Xin et al., 2018) and analyzed by immunoblotting with anti‐p‐AKT, anti‐AKT and anti‐S6K (OmnimAbs, California), anti‐p‐S6K1, anti‐MUC1‐C, anti‐TIGAR, anti‐PDCD4 (Abcam, San Francisco, CA), and anti‐β‐actin (Boster, Wuhan, Hubei, China). Reactivity was quantified with horseradish peroxidase‐conjugated secondary antibodies and enhanced chemiluminescence detection system (Amersham Imager 600; General Electric, Fairfield, CT).
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7

Western Blot Analysis of Apoptosis Markers

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The western blot analysis was performed according to the standard protocol. The tissue was lysed with RIPA buffer (Solarbio, Beijing, China) containing 1 mM PMSF. After high-speed centrifugation, use the loading buffer to collect the tissue lysate. An equal amount of protein samples is separated on a 10% SDS-PAGE gel and then transferred to a PVDF membrane. And sealed in 5% skimmed milk for 1 h. PDCD4 antibody, cleaved caspase-3 antibody, Caspase-3 antibody, and GAPDH antibody were diluted by 1:500, 1:1000, 1:1000, and 1:5000, respectively. The membrane was incubated with the primary antibody overnight at 4°C, and then incubated with the horseradish peroxidase (HRP) secondary antibody (1:10,000) for 1 h at room temperature, and finally the detection strip was incubated with ECL working solution (Us Everbright, Suzhou, China). Antibodies were purchased from the following sources: anti-PDCD4 (catalogue number: ab80590) from Abcam, anti-cleaved-caspase-3 (catalogue number: 9661) from Cell Signaling Technology, anti-caspase-3 (catalogue number: 66470-2-Ig) and anti-GAPDH (catalogue number: 60004-1-Ig) from Proteintech.
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