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16 protocols using 470 nm led

1

Simultaneous SC Optogenetic Stimulation and Neuronal Recording

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For simultaneous recording and light activation of SC, we used an optrode equipped with an optic fiber (125 µm core diameter; Neuronexus). The optrode optic fiber was connected to a 470 nm LED (Thorlabs), with the power of blue light out of the fiber tip set to 1.8 mW. The LED was controlled through a National Instrument board using programs written in Matlab (MathWorks, Inc., Natick, MA). For activating SC while recording from vS1 or POm, photo activation was delivered through an optic fiber (200 µm core diameter) connected to a 470 nm LED (Thorlabs). In this case, the power of blue light from the tip of the optic fiber was 2.9 mW. Both the optrode and the optic fiber were inserted vertically into the SC (1.5–2.5 mm from the surface). The duration of SC light activation was 15 ms. In a subset of control experiments, optrodes (125 µm core diameter; Neuronexus) were inserted at an oblique angle of 45° into vS1 to simultaneously record and potentially stimulate vS1 neurons.
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2

Optogenetic Evaluation of Neuropathic Pain

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VGluT3-ChR2 mice were placed in acrylic glass cylinders on a wire mesh floor and habituated for at least 1 h before testing. An optical fiber (Ø: 1000 μm, Thor Labs), coupled to a 470 nm LED (Thor Labs) was positioned closely to the plantar surface of the hindpaw and a 10 s light stimulus (60–80 mW/mm2 at the fiber tip) was applied. Each hindpaw was stimulated twice (oxaliplatin model), or the operated paw was stimulated three times (CCI model), with at least 15 min pause in between two stimulations. The behavior of the mice was videotaped to determine the reaction latency and to evaluate the behavior of the animals with the following score; 0: no behavior, 1: glancing at the paw, 2: paw withdrawal, 3: flinching, 4: paw shaking, 5: paw licking (Abbott et al., 1995 (link); Caterina et al., 2000 (link); Caspani et al., 2009 (link)).
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Fluorescent Imaging of Voltage Sensors

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Fluorescent imaging of voltage sensors expressed in cultured hippocampal neurons for Fig. 2, Supplementary Fig. 12–16 and Supplementary Fig. 18, 19 was performed using a Nikon Eclipse Ti inverted microscope equipped with a 40x NA 1.15 water immersion objective (Nikon), a 637 nm Laser (637 LX, OBIS) focused on the back focal plane of the objective, a SPECTRA X light engine (Lumencor) with 475/28 nm, 585/29 nm, and 631/28 nm exciters (Semrock), a 470 nm LED (ThorLabs) and a 5.5 Zyla camera (Andor), controlled by NIS-Elements AR software.
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Visualizing and Characterizing Cholinergic Interneurons

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VTA GABA neuron inhibition of NAc CINs was the pathway focus for most of the electrophysiological recordings. In ChAT-ChR2-eYFP mice, CINs could be visualized with eYFP fluorescence. In VGAT-Cre/GAD67-GFP mice, CINs were visualized in the slice preparation as non-GFP neurons amongst predominantly GABA neurons. In mice without fluorescent identification, CINs were identifiable by their large size, morphology, tonic firing (~0.5–3Hz), high membrane capacitance (due to large size), and presence of an Ih current40 (link). Fluorescent cells were imaged on Olympus BX5 and Nikon Eclipse FNI microscopes with 40x/0.80 n.a. objective lens. The filter cube for GFP detection and ChR2 stimulation was an Olympus GFP U-M6553 cube (Bandpass: 470–490 nm; Barrier: 510–560 nm; dichroic: 505 nm) or Nikon C-FL ENDOW GFP 96343 cube (Bandpass: 450–490 nm; Barrier: 500–550 nm; dichroic: 495 nm). Excitation was performed with a Thorlabs 470 nm LED. Cells were also imaged using infrared differential interference contrast imaging in order to facilitate physiological recordings.
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5

Simultaneous Imaging of Cultured Neurons

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Cultured hippocampal neurons expressing ASAP3 were imaged on a customized upright fluorescent microscope with a 20× 1.0NA objective lens (Olympus). The light from a 470 nm LED (Thorlabs) was cleaned with a 469/35nm band pass filter (Semrock) for excitation. A 488nm long pass dichroic mirror and a 496nm long pass filter were used for illumination and emission. Using a 50/50 beam splitter (Thorlabs), the sample image was evenly split onto both the Hamamatsu sCMOS camera and our PE-CMOS sensor for side-by-side comparison.
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6

Optogenetic Stimulation of Dorsal Root Ganglia

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Channelrhodopsin-2 activation was performed at the level of the DRG with an optical fibre (BFL48-400 or BFL48-1000) coupled to a 470 nm LED (Thorlabs, Munich, Germany), unless stated otherwise. Light-intensities, measured with a hand-held power meter (Lasercheck; Coherent, Dieburg, Germany), were 60–80 mW/mm2. In VGluT3−/− mice, dorsal root stimulation was performed by a square current pulse of 0.1 ms duration and at least twice the response threshold, delivered with a suction electrode coupled to a constant current stimulator (A320, WPI, Sarasota, FL, USA), as described previously [27 (link)]. Paired-pulse stimulation was performed every 30 s at paired-pulse intervals of 300 to 500 ms.
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7

Optogenetic Mapping of CGRP Connectivity

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To verify CGRP connectivity to post-synaptic neurons, light-evoked EPSCs were recorded from cells surrounded by ChR2:YFP-positive fibers in each downstream site. Neurons were held in voltage clamp at −70 mV and EPSCs were evoked by 10 ms pulses of blue light delivered through the objective via a 470 nm LED (ThorLabs). Events were analyzed in Clampfit v.11.0.3 (Molecular Devices).
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8

Widefield Fluorescence Imaging of Acute Brain Slices

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Following 3 – 5 weeks of expression, acute slices were prepared as described in Lutas et al., 2019 (link), and widefield fluorescence imaging was performed on an upright microscope (Axioskop 2 plus; Zeiss) equipped with an sCMOS II camera (Prime, Photometrics). Fluorescence excitation for imaging was achieved using a 470 nm LED (Thorlabs). Image acquisition was performed using ImageJ Micro-manager (Edelstein et al., 2014 (link)). Image acquisition frame rate was 2 Hz for cADDis fluorescence imaging. A 10x (Olympus) or 20x (Zeiss) objective was used for all imaging experiments. During imaging, slices were continuously superfused (flow rate: 2–5 ml/min) with oxygenated (95% O2 and 5% CO2) artificial cerebrospinal fluid (ACSF) at room temperature. To prevent oxidation of dopamine, 50 μM Na-metabisulfite was included in all ACSF solutions during dopamine application experiments.
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9

Functional Mapping for Whisker Stimulation

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In order to select specific whisker regions for imaging and optogenetic inactivation, functional mapping was performed using optical intrinsic signal imaging (ISI) for S1 and a combination of ISI and two-photon calcium imaging for S2. For ISI, the animal was anesthetized with 1.5% isoflurane. The cortical surface was illuminated with a 625-nm LED (Thor Labs). Individual whiskers were stimulated at 10 Hz with a piezo-electric stimulator. Reflectance images were collected through a f = 25mm lens (Navitar) using a CMOS Camera (Hamamatsu; 6.5 um pixel size, 4 x 4 binning, 512 x 512 binned pixels, 30 Hz frame rate). Changes in reflectance during stimulation compared to pre-stimulation were expressed as ΔR/R (150 frame average). Barrel columns were identified as signal minima after averaging intrinsic reflectance signals over 10 trials. A blood vessel map of the cortical area surface was obtained with a 470 nm LED (Thor Labs) for registration and targeting of regions. In situations where ISI maps in S2 were weak, regions were identified and selected for by two-photon calcium imaging of RCamp1.07 signals following whisker stimulation. Whiskers were trimmed to a single row corresponding to the selected imaging or stimulation region.
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10

Fluorescent Staining and Imaging of Swarming Bacteria

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Staining cells with the fluorogenic dyes hexidium iodide and Syto 9 was also used to distinguish P. vortex from Gram-negative cargo bacteria. To stain moving colonies, 4-mm-diameter areas of agar 1 cm ahead of the moving colony were impregnated with 30 µM Syto 9 and 15 µM hexidium iodide (Life Technologies, Bleiswijk, Netherlands) in a 10-µl aliquot of sterile water and allowed to dry into the agar. Bacteria were stained as they swarmed into this region. Imaging was done with a BX-41 fluorescence microscope equipped with a Kappa 8 b, black and white charge-coupled-device camera and 4× and 10× Fluorotar objective lenses (8 (link)). Swarming on MH agar plates was monitored with a Dino-Lite AM7031MT USB microscope with Dinocapture software (version 1.3.6K) and by imaging plates on a heated slide warmer at 37°C through the agar. Illumination of whole plates to detect GFP expression was performed with a 470-nm LED (Thorlabs, Dachau, Germany). Calculations of swarm rates and colony diameters were made using the ImageJ software package, version 1.45s (44 (link)).
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