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8 protocols using dulbecco s modified

1

HEK293T Cilia Generation Protocol

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Human embryonic kidney 293T cells (HEK293T) were cultured in Dulbecco’s modified Eagle medium high glucose (DMEM, Biowest) supplemented with 10% FBS, 1.3% L-glutamine and 1.3% Pen/Strep and incubated at 37 °C and 5% CO2. For transient transfections, 0.8 × 106 HEK293T cells were seeded in 6-well plates and cultured for 24 h. Cells were transiently transfected with polyethyleneimine (PEI) (Sigma-Aldrich, St. Louis, MO, USA) using a DNA/PEI ratio of 1:4. After 6 h of incubation the transfection medium was replaced with fresh media with or without 30 µM PTC124. To support cilia generation, the medium was replaced 24 h after transfection with FBS-free DMEM with or without 30 µM PTC124 for 48 h. After 48 h the starved cells were used for protein isolation.
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2

Cell Culture Protocol for U2OS Variants

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U2OS cells (human osteosarcoma, ATCC #HTB-96), U2OSR1, U2OS-SBP-R1 (U2OS cells stably transfected with SBP-FGFR1) and U2OS-R1-K514R cells were a kind gift of Dr. E.M. Haugsten from the Institute for Cancer Research, Oslo University Hospital. Cells were cultivated in Dulbecco’s Modified Eagle’s Medium (DMEM, Biowest) supplemented with 10% fetal bovine serum (Thermo Fisher Scientific) and antibiotics (100 U/ml penicillin, 100 μg/ml streptomycin). For U2OS-R1, U2OS-R1-K514R and USOS-SBP-R1 cells growth media were additionally supplemented with geneticin (0.2–1 mg/ml). NIH3T3 (murine embryonic fibroblasts, ATCC #CRL-1658) were grown in DMEM supplemented with 2% bovine serum (Thermo Fisher Scientific) and antibiotics (100 U/ml penicillin, 100 μg/ml streptomycin). All cells were cultivated in 5% CO2 atmosphere at 37 °C and seeded into tissue culture plates 1 day prior start of the experiments.
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3

Chondrocyte Isolation and IL-1β Treatment

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The primary culture of chondrocytes was performed according to the published literature [14 (link)]. Chondrocytes were isolated from the articular cartilage of newborn rats and mice (24 h old) and then dispersed in 0.1% collagenase type II (C6885, Sigma-Aldrich, Switzerland) in a shaker at 37 °C for 3 h. The chondrocytes were collected and cultured in Dulbecco’s modified Eagle’s medium (DMEM, Biowest, France) supplemented with 10% FBS (Biowest, France) and 1% penicillin–streptomycin. Chondrocytes at passage 1 were used in all experiments to prevent chondrocyte dedifferentiation during long-term in vitro expansion [15 (link)].
The chondrocytes of rats and mice were divided into the control group (RC = rat control group, MC = mouse control group) and model group (RM = rat model group, MM = mouse model group). The chondrocytes in the model groups were stimulated with 20 ng/ml IL-1β (R&D Company) for 24 h and extracted for sequencing.
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4

HeLa Cell Culture Protocol

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HeLa cells (Sigma-Aldrich) were maintained in Dulbecco’s modified Eagle’s medium, supplemented with 10% fetal bovine serum (Biowest SAS, France), 4 mM L-glutamine, 100 U/ml penicillin and 100 µg/ml streptomycin solution. Cells were cultured in a humidified atmosphere containing 5% CO2 at 37 °C. On reaching 80% confluence, cells were detached every 3–4 days using 0.05% (w/v) trypsin, 0.02% (w/v) EDTA solution.
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5

Cell Line Culture Protocol

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Jurkat (TIB-152), Namalwa cells (CRL-1432), Nalm6 (CRL-3273), and K562 cells (CCL-243) were purchased from the ATCC and cultured in RPMI-1640 media supplemented with 10% fetal bovine serum (FBS) and 100 U/mL penicillin/streptomycin (1%P/S, Biowest) at 37°C in a 5% CO2 and 85%–90% humidified incubator. HEK-293T cells were cultured in high-glucose Dulbecco’s Modified Eagle’s Media (DMEM, Biowest) supplemented with 10% FBS (Invitrogen) at 10% CO2 atmosphere. MiaPaCa2 (CRL-1420) were cultured in DMEM supplemented with 10% FBS and 1% P/S, and SK-MES-1 (HTB-58) cells were cultured with DMEM (Gibco) supplemented with GlutaMAX, 10% FBS, and 100 U/mL of P/S (Invitrogen). Cells were maintained in incubators at 37°C with 5% CO2 atmosphere and 85%–90% relative humidity. Absence of Mycoplasma spp. in cultured cells was routinely tested by a PCR-based assay (Minerva).
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6

Isolation of Neonatal Rat Cardiomyocytes

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Primary cultures of neonatal rat cardiomyocytes were prepared as described as previously [35 (link)]. In brief, neonatal ventricular myocytes from 1- to 2-day-old Sprague-Dawley rats were sacrificed by decapitation and hearts were immediately removed and subjected to Percoll gradient centrifugation and differential plating to enrich the cardiac myocyte population and to deplete non-myocytes. Cardiomyocytes were cultured in a mixture of Dulbecco’s modified Eagle’s medium (DMEM) and M199 with 10% fetal bovine serum (FBS; Biowest, Nuaille, France).
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7

Maintenance and Assay of HeLa Cells

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HeLa cells
(ECACC 93021013 human, cervix, epitheloid, and carcinoma) were maintained
in a humidified incubator (37 °C, 5% CO2) in Dulbecco’s
modified Eagle’s medium, supplemented with 4 mM L-glutamine,
10% fetal bovine serum (Biowest SAS, France), 100 U/mL penicillin,
100 μg/mL streptomycin solution, and 0.25 μg/mL amphotericin
B. Cell adhesion assay buffer was prepared by adding 20 mM 4-(2-hydroxyethyl)-1-piperazine
ethanesulfonic acid (HEPES, Sigma-Aldrich) to Hank’s balanced
salt solution (HBSS, Sigma-Aldrich), pH 7.0.1 (link)
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8

Virus Infection Assay in Mammalian Cell Lines

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Virus infections were performed on Vero ATCC CCL-81 or SH-SY5Y ATCC CRL-2266 cells (ATCC, Manassas, VA). Vero cells were cultured in minimal essential medium (MEM) (Corning, Manassas, VA) supplemented with 10% fetal bovine serum (Gibco, Life Technologies, Paisley, UK), and SH-SY5Y cells were grown in Dulbecco’s modified Eagle’s medium (DMEM)–F-12 medium (Biowest, Nuaillé, France) supplemented with 10% fetal bovine serum. A penicillin-streptomycin mixture (Corning) and l-glutamine (Corning) were also added to cell cultures. WNV New York 99 (60 (link)), USUV SAAR 1776 (60 (link)), American ZIKV PA259459 (61 (link)), a cell-passaged derivative of DENV-2 16681 (16 (link)), VSV Indiana (61 (link)), and CVB5 Faulkner (62 (link)) were used. Procedures for infections in liquid medium and virus titrations in Vero cells in semisolid agar medium were previously described (62 (link), 63 (link)). WNV, USUV, ZIKV, VSV, and CVB5 titers were determined at 24 h postinfection (p.i.). DENV-2 titers were determined at 48 h p.i. A multiplicity of infection (MOI) of 1 PFU/cell was used for all experiments unless otherwise indicated.
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