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Scrambled sirna control si nc

Manufactured by GenePharma
Sourced in China

Scrambled siRNA control (si-NC) is a laboratory tool designed to serve as a negative control for RNA interference (RNAi) experiments. It is a synthetic, non-targeting siRNA sequence that does not have any known sequence complementarity to the human, mouse, or rat transcriptome. This product is intended to be used alongside experimental siRNA samples to help distinguish specific gene silencing effects from non-specific or off-target effects.

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7 protocols using scrambled sirna control si nc

1

Modulating XIST and PAPPA in HUVECs

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Small interfering RNA (siRNA) against XIST (si-XIST) or PAPPA (si-PAPPA) and siRNA scrambled control (si-NC), XIST overexpression vector (pcDNA-XIST), and its negative control (pcDNA) were acquired from GenePharma (Shanghai, China). MiR-98-5p mimic (miR-98-5p) and control (miR-NC) and miR-98-5p inhibitor (anti-miR-98-5p) and control (anti-NC) were provided by Sangon (Shanghai, China). Different oligonucleotides or vectors were transfected into HUVECs with Lipofectamine 2000 reagent (Qiagen) following the user’s guidebook.
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2

Targeting circHIPK3 and miR-876-5p in Gastric Cancer

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Specific small interfering RNA (siRNA) against circHIPK3 (si-circHIPK3) and siRNA scrambled control (si-NC), and short hairpin RNA objecting circHIPK3 (sh-circHIPK3) and shRNA scrambled control (sh-NC) were purchased from GenePharma (Shanghai, China). The miR-876-5p mimic (miR-876-5p) and its negative control (miR-NC), and miR-876-5p inhibitor (anti-miR-876-5p) and its negative control (anti-miR-NC) were designed and acquired from Thermo Fisher Scientific (Waltham, MA, USA). HGC-27 and AGS cells were transfected with plasmids or oligonucleotides using Lipofecamine2000 (Invitrogen, Carlsbad, CA, USA). The sequences for si-circHIPK3, si-NC, sh-circHIPK3 and sh-NC were as follows: si-circHIPK3: 5′-CUACAGGUAUGGCCUCACA-3′, si-NC: 5′-UUCUCCGAACGUGUCACGUTT-3′, sh-circHIPK3: 5′-ccggCUACAGGUAUGGCCUCACAttcaagagaTGTGAGGCCATACCTGTAGTTTTTTGGTACC-3′, sh-NC: 5′- ccggUUCUCCGAACGUGUCACGUTTttcaagagaAATCGTGACACGTTCGGAGAATTTTTTGGTACC-3′. For overexpression of PIK3R1 (PIK3R1), the primers were used for amplification and then cloned in the mammalian expression pcDNA3.1 vector (Invitrogen), PIK3R1 F-5′-CCGGAATTCATGAGTGCTGAGGGGTACCAGTAC-3′; and R-5′-CCGCTCGAGATCGCCTCTGCTGTGCATATATA-3′.
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3

Modulating circPOSTN and TPX2 in Glioma Cells

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Specific small interfering RNA (siRNA) against circPOSTN (si-circPOSTN) or against TPX2 (si-TPX2) and siRNA scrambled control (si-NC), plasmid-mediated pcDNA and pcDNA-circPOSTN, miR-361-5p mimic and miR-NC, anti-miR-361-5p and anti-miR-NC were purchased from Genepharma (Shanghai, China). The lentiviral vectors of specific short hairpin RNA (shRNA) target circPOSTN (sh-circPOSTN) and shRNA scrambled control (sh-NC) were constructed by Sangon (Shanghai, China). For transfection assay, LN229 and U251 cells were seeded into 6-well plates (3 × 104 cells/well) overnight, and cell density reached 70–80% prior to transfection. The transfection analysis was conducted with Lipofectamine 2000 (Invitrogen) according to the recommendations. In addition, the concentrations of oligonucleotides for transfection were 50 nM. The concentrations of plasmids for transfection were 100 nM.
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4

Plasmid Construction and Gene Silencing

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To construct UCA1 overexpression plasmid, full length of UCA1 cDNA sequence was amplified, cloned into pcDNA3.1 vector (Invitrogen) and sequenced, named as pcDNA3.1‐UCA1 (UCA1). The specific small interference RNA (siRNA) targeting UCA1 (si‐UCA1) and scrambled siRNA control (si‐NC) were obtained from GenePharma Co., Ltd (Shanghai, China). miR‐184 mimic (miR‐184), scrambled mimic control (miR‐NC), miR‐184 inhibitor (anti‐miR‐184), and inhibitor control (anti‐miR‐NC) were purchased from RiboBio (Guangzhou, China).All these plasmids and oligonucleotides were transfected into cells by lipofectamine 2000 reagent (Invitrogen) following the manufacturer's instructions.
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5

Overexpression and Silencing of UCA1 in Cells

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To construct UCA1 overexpression plasmid, the full length of the UCA1 cDNA sequence was amplified, cloned into pcDNA3.1 vector (Invitrogen), and sequenced and named as pcDNA3.1-UCA1 (UCA1). Three specific small interference RNAs (siRNAs) targeting UCA1 (si-UCA1#1, si-UCA1#2, and si-UCA1#3) and scrambled siRNA control (si-NC) were obtained from GenePharma (Shanghai, China). miR-143 mimic (miR-143) and scrambled mimic control (miR-NC) were purchased from RiboBio (Guangzhou, China). All these plasmids and oligonucleotides were transfected into cells by Lipofectamine 2000 reagent (Invitrogen) following the manufacturer’s instructions.
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6

Overexpression and Silencing of UCA1 in Cells

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Overexpressed UCA1 (pcDNA-UCA1) clones were based on the pcDNA-3.1 vector (Invitrogen). The UCA1 fragments were obtained by PCR and inserted into the XbaI/EcoRI sites. The constructs were identified and sequenced. The primers used were listed as follows: UCA1 forward primer F: 5′-CCGCTCGAGAGCGCGTGTGGCGGCCGAGCAC-3′, and UCA1 reverse primer R: 5′-CGCGGATCC AGACACGAGGCCGGCCACGCCACG-3′. Three specific siRNA targeting UCA1 (si-UCA1#1, si-UCA1#2, and si-UCA1#3) and scrambled siRNA control (si-NC) were obtained from GenePharma (Shanghai, China). The sequences were described as follows: si-UCA1#1: 5′-GGACAACAGUACACGCAUATT-3′; si-UCA1#2: 5′-GCCACCUACAUUAAAGCUATT-3′; si-UCA1#3: 5′-GACCAGACCCTACCCGGTCATTTATUATT-3′; miR-143 mimic (miR-143), scrambled mimic control (miR-NC), miR-143 inhibitor (anti-miR-143), and inhibitor control (anti-miR- NC) were purchased from RiboBio (Guangzhou, China). All these plasmids and oligonucleotides were transfected into cells by Lipofectamine 2000 reagent (Invitrogen) following the manufacturer’s instructions.
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7

Ovarian Cancer Cell Line Experiments

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The human OC cell lines (OVCAR5, OVCAR3, A2780 and SKOV3 cells) and normal ovarian epithelial cell line IOSE80 were purchased from American Type Culture Collection (ATCC, USA). These cells were cultured using RPMI-1640 medium (Gibco, Grand Island, NY, USA), supplemented with 10% FBS (HyClone, Logan, UT, USA) in a humidified atmosphere, at 37 °C with 5% CO2.
Specific siRNA RHPN1-AS1 and scrambled siRNA control (si-NC) were purchased from GenePharma (Shanghai, China). miR-1299 mimics, miR-1299 inhibitors and negative controls were from RiboBio (Guangzhou, China). All oligonucleotides were transfected into cells using Lipofectamine 2000 reagent (Invitrogen) according to the manufacturer’s instructions.
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