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10 protocols using f4 80 pe cy7 bm8

1

Multiparameter Flow Cytometry Analysis

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CD23 (B3B4)-PE and -BV421[1:200], TCRβ (H57-597)-PE[1:400], Ter-119-PE[1:400], CD138 (281-2)-PE[1:400] and XBP1s (Q3-695)-PE-CF594[1:200] were purchased from BD Biosciences. IgD (11-26.2a)-APC-Cy7[1:200], CD4 (GK1.5)-PE-Cy7[1:400], Ter-119-PE-Cy7[1:400], F4-80 (BM8)-PE-Cy7[1:400], Sca-1 (D7)-BV605[1:200], B220 (RA3-6B2)-BV421[1:200], and CD138 (281-2)-BV605[1:400] were purchased from BioLegend. ATF-4 (D4B8)[1:1000], XBP1s (E8Y5F) [1:1000], p58IPK (C56E7)[1:1000], ATF-6 (D4Z8V) [1:1000], BiP (C50B12)-PE[1:200], pAKT (S473) (D9E)-PE[1:100] and pS6(S235/236) (D57.2.2E)-PE-Cy7[1:200] were purchased from Cell Signaling Technology. AA4.1-APC[1:100], CD21/35 (8D9)-PE-Cy7[1:200], IgM (11/41)-PerCP-ef710[1:200], and CD8α (53-6.7)-PE and -PE-Cy7[1:400] were purchased from eBioscience (ThermoFisher). CD19 (6D5)-APC-Cy5.5[1:150] and F4-80 (BM8)-PE[1:400] were purchased from Invitrogen. B220 (RA3-6B2)-APC[1:200] was purchased from Tonbo biosciences.
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2

Multicolor Flow Cytometry Protocol for Immune Cell Profiling

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Leukocytes were stained with the following antibodies: F4/80 (BM8)-PEcy7 (BioLegend), Ly6C (AL-21)-APCCy7, Ly6G (1A-8)-APC, CD11b (M1/70)-BV421, CD206 (19.2)-APC, and CD3 (SK7)-BV421 (BD Biosciences). Total macrophages (F4/80+), monocytes (Ly6C+F4/80), neutrophils (Ly6G+), and lymphocytes (CD3+) were evaluated. Events were acquired in FACSCanto II (BD Biosciences) and analyzed using FlowJo Software (Tree Star Inc.). Macrophage phenotypes were defined by the expression of F4/80, CD11b, Ly6C, and CD206, as described previously (16 (link), 25 (link)).
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3

Multicolor Flow Cytometry Analysis of Immune Cell Populations

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Anti-GD2 (clone 14.g2a) mAb was purified and filter sterilized in PBS. Total mouse IgG control Ab was obtained from Jackson Immunoresearch. Directly labeled mAbs used for staining were CD11b-A700 (M1/70), H-2Kb/H-2Db-PE (28-8-2006), F4/80-PE-Cy7 (BM8), CD11c-PerCP (N418), CD4-PerCP (L3T4), Ly-6G-PE-Cy7 (1A8), CD64-PE (X54-5/7.1), CD16/CD32-A647 (2.4G2), CD206-APC (MR5D3) from Biolegend, CD45.2-FITC (104), CD11c-APC (HL3), NK1.1-PE (PK136), Ly-6C-PE (AL-21) and CD3-APC (145-2C11) from BD, MHC II-PE (M5/114.15.2) and FoxP3-PE-Cy7 (FJK-16s) from eBioscience, CD8-A700 (53–6.7) from Exbio. Cells for staining were washed in PBS, incubated with Viability Dye eFluor 780 (eBioscience), resuspended in PBA, transferred to a V-bottom 96-wells plate and stained using specific mAb or the appropriate isotypes. Cells analyzed on a Cyan apparatus (Beckman Coulter) using Summit software.
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4

Multicolor Flow Cytometry Immunophenotyping

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Single cell suspensions were stained with Live/Dead Yellow (Life Technologies, Grand Island, NY), CD11b-PerCp/Cy5.5 (M1/70, Biolegend, San Diego, CA), I-A/I-E-AF488 (M5/114.15.2, Biolegend), Gr-1-Pacific Orange (RB6-8C5, Life Technologies), F4/80-PE-Cy7 (BM8, Biolegend), CD11c-APC-Cy7 (HL3, BD Biosciences, San Jose, CA), CD117-PE-Cy5 (2B8, Biolegend) and FcεRI (Mar-1, Biolegend). Ly6-C-Pacific Blue (HK1.4, Biolegend) and Ly6-G-AF647 (1A8, Biolegend) were used in adoptive transfer experiments. For intracellular cytokine staining, cells were stimulated for 4.5 h with 30 nM phorbol 12-myristate 13-acetate and 1 μM ionomycin (both eBioscience) in presence of Golgistop (BD). Cells were subsequently stained against cell surface markers (CD4-PerCp/Cy5.5, GK1.5; CD3-AF700, 17A2; CD8-PE/CF594, 53-6.7; all Biolegend) followed by fixation/permeabilization (Cytofix/Cytoperm, BD) and staining using IL-17A-Pacific Blue (TC11-18H10.1, Biolegend). Flow cytometry was performed using a LSRII cytometer (BD) and data were analyzed with FACSDi-Va 6.1.3 software (BD). For cell sorting (FACS) experiments, myeloid populations were sorted using an AriaII cytometer (BD). MO-MDSCs were sorted as CD45+CD3-CD11bhiGr-1lowF4/80-/lowMHC-II-/low, PMN-MDSCs as CD45+CD3-CD11bhiGr-1hiF4/80-MHC-II-, and MΦ as CD45+CD3-CD11bhiGr-1-/lowF4/80hiMHC-II+ cells.
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5

Cardiac Tissue Immune Cell Analysis

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Cardiac tissue was isolated after sham or TAC surgery. Tissue was digested with collagenase I (450 U/mL), collagenase XI (125 U/mL), DNase I (60 U/mL), and hyaluronidase (60 U/mL), and the isolated cells from digested tissue were immunostained with fluorescently conjugated antibodies against CD45‐Pacific Blue, 30‐F11 (BioLegend Catalog #103126), Ly6G‐PE, 1A8 (BioLegend Catalog #127618), CD11b‐APC‐Cy7, M1/70 (BioLegend Catalog #101226), F4/80‐PE‐Cy7, BM8 (BioLegend Catalog #123114), and Ly6C‐FITC, HK1.4 (BioLegend Catalog #128006). Dead cells were excluded by staining with DAPI. Immunostained fluorescent cells were analyzed by flow cytometry using a BD LSR II flow cytometer (BD Bioscience). Additionally, isolated cardiac tissue was lysed and analyzed for inflammatory cytokines interleukin‐1β, inrerleukin‐6, and C‐C motif chemokine ligand 2 by quantitative reverse transcription PCR. Real‐time PCR primers are listed in Table S1.
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6

Multiparametric Flow Cytometry Analysis

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Antibodies were obtained from BioLegend and used at a dilution of 1:200: CD45 BV605 (30‐F11), CD11b BV785 (M1/70), F4/80 PE‐Cy7 (BM8), SiglecF BV421 (S17007L), Ly6C APC‐Fire 750 (HK1·4), CD11c BV650 (N418), MHCII AF700 (M5/114·15·2), CD64 AF647 (X54‐5/7·1), MerTK FITC (2B10C42) and CD206 PerCP‐Cy5·5 (C068C2) for 30 min at 4°C. Ly6G BUV395 (1A8) and CD103 BUV805 (M290) were obtained from BD Bioscience. Dead cells were excluded using Fixable Viability Dye eFluor 506 (Thermo Fisher). Flow cytometry was performed using a Fortessa (BDBiosciences) and analysed using FlowJo V10.
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7

Peritoneal Macrophage Isolation and Characterization

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Peritoneal cells were isolated by washing the peritoneal cavity twice with cold PBS 1x. Peritoneal exudate were then treated with ACK Lysis buffer to lyse red blood cells and washed once with PBS. Cells were then re-suspended to single-cell suspensions for staining with fluorescently conjugated antibodies at 1:100 dilutions, unless otherwise noted. Antibodies were diluted using 2% fetal bovine serum (FBS). Cells were stained with one of either LIVE/DEAD™ Blue (Invitrogen) or LIVE/DEAD™ Near-IR (Invitrogen), blocked with 4~g/ml anti-CD16/32 (2.4G2; Bioxcell) and stained with anti-CD11b Pacific Blue (M1/70; Biolegend), F4/80 PECy7 (BM8; Biolegend), CD206 APC (C068C2; Biolegend), Siglec-F PE (E50–2440; BD Biosciences), CD3 PE (145–2C11; Biolegend), CD19 PE (6D5; Biolegend), CD49b PE (DX5; Biolegend), Ly6G (1A8; Biolegend), PD-L2 (PerCP-Cy55; Miltenyi; diluted at 1:20), MHCII (APC-Cy7; Biolegend). Cells were gated on singlet, live, Dump-negative (CD3–, CD19–, DX5–, Siglec-F–, Ly6G–), CD11b+, then subsequently gated on their Mres and AAMres (F4/80hi, CD206–) or Mmono and AAMmono (F4/80int, CD206+) phenotype. Cell surface expression of PD-L2 and MHCII were acquired for analysis. Cells were sorted using 100μm nozzle into FBS, on either BD FACSAriaII or SONY HAPS1, depending on instrument availability.
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8

Macrophage Immunophenotyping by Flow Cytometry

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Peritoneal lavage fluid was stained with F4/80-PE/Cy7 (BM8) (Biolegend) and CD11b-APC/A700 (M1I70) (eBioscience) antibodies for 35 min. Red blood cells (RBCs) were lysed with RBC lysis buffer (Becton Dickinson) for 5 min. Cells were fixed with 1% paraformaldehyde and analysed on an LSRII flow cytometer (BD). Macrophages were defined as F4/80+CD11b+ cells.
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9

Multicolor Flow Cytometry Immunophenotyping

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Single cell suspensions were stained with Live/Dead Yellow (Life Technologies, Grand Island, NY), CD11b-PerCp/Cy5.5 (M1/70, Biolegend, San Diego, CA), I-A/I-E-AF488 (M5/114.15.2, Biolegend), Gr-1-Pacific Orange (RB6-8C5, Life Technologies), F4/80-PE-Cy7 (BM8, Biolegend), CD11c-APC-Cy7 (HL3, BD Biosciences, San Jose, CA), CD117-PE-Cy5 (2B8, Biolegend) and FcεRI (Mar-1, Biolegend). Ly6-C-Pacific Blue (HK1.4, Biolegend) and Ly6-G-AF647 (1A8, Biolegend) were used in adoptive transfer experiments. For intracellular cytokine staining, cells were stimulated for 4.5 h with 30 nM phorbol 12-myristate 13-acetate and 1 μM ionomycin (both eBioscience) in presence of Golgistop (BD). Cells were subsequently stained against cell surface markers (CD4-PerCp/Cy5.5, GK1.5; CD3-AF700, 17A2; CD8-PE/CF594, 53-6.7; all Biolegend) followed by fixation/permeabilization (Cytofix/Cytoperm, BD) and staining using IL-17A-Pacific Blue (TC11-18H10.1, Biolegend). Flow cytometry was performed using a LSRII cytometer (BD) and data were analyzed with FACSDi-Va 6.1.3 software (BD). For cell sorting (FACS) experiments, myeloid populations were sorted using an AriaII cytometer (BD). MO-MDSCs were sorted as CD45+CD3-CD11bhiGr-1lowF4/80-/lowMHC-II-/low, PMN-MDSCs as CD45+CD3-CD11bhiGr-1hiF4/80-MHC-II-, and MΦ as CD45+CD3-CD11bhiGr-1-/lowF4/80hiMHC-II+ cells.
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10

Multiparametric Flow Cytometry Analysis

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Cells were incubated with anti-CD16/32 (Fc-block, BioLegend) to prevent unspecific binding of antibodies and stained with Fixable Viability Dye (eFlour506, eBioscience) to exclude dead cells. After washing, cells were incubated with an antibody mixture containing Ly6C-PerCP-cy5.5 (HK1.4; Biolegend), CD24-PE (M1/69, Biolegend), CD8-PE-Cy5 (53-6.7, Biolegend), F4/80-PE-Cy7 (BM8, Biolegend), CD11c-APC (N418, Biolegend), Ly6G-AlexaFluor700 (1A8, Biolegend), CD11b-APC-Cy7 (M1/70, Biolegend), CD64-BV421 (X54-5/7.1, Biolegend), CD45-BV605 (30-F11, Biolegend) and IA/IE-BV650 (M5/114.15.2, Biolegend) for 10 min at 4°C in the dark. Gating of different immune subsets were performed as described elsewhere (22 (link)) Afterwards cells were washed with PBS and resuspended in an appropriate volume of FACS buffer.
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