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10 protocols using anti py705 stat3

1

Evaluating Signaling Pathways in Cells

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H2O2 (30%) and crystal violet was purchased from Sigma (St. Louis, MO, USA). MTT reagent was purchased from Duchefa Biochemie (Haarlem, Netherlands). anti-pY701-STAT1, anti-STAT1, anti-pY705-STAT3, anti-STAT3, pY694-STAT5, anti-STAT5, anti-pT202/Y204-p44/42 MAPK (Erk1/2), anti-p44/42 MAPK (Erk1/2), anti-pT183/Y185-SAPK/JNK and anti-SAPK/JNK, anti-pT180/Y182-p38, anti-p38, anti-pS473-Akt, anti-Akt, anti-PT389-p70S6 kinase, anti- p70S6 kinase, anti-pS133-CREB, anti-CREB were purchased from Cell Signaling Technology (Danvers, MA, USA). anti-Synaptophysin, anti-PSD95, anti-pT205-Tau, anti-pS262-Tau, and anti-Tau were purchased from ABclonal (Wuhan, China). anti-α-Tubulin was purchased from Abbkine (Wuhan, China). All other chemicals were obtained from Sigma-Aldrich (St. Louis, MO, USA).
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2

Western Blotting for Protein Detection

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Western blotting was carried out according to the standard protocol. Primary antibodies were obtained from the following sources: anti‐β‐actin (A5316; Sigma‐Aldrich, St. Louis, MO), monoclonal anti‐Flag (F1804; Sigma‐Aldrich), anti‐STAT3 (#12640; Cell Signaling Technology), and anti‐pY705‐STAT3 (#9145; Cell Signaling Technology). Horseradish peroxidase‐conjugated goat anti‐mouse and anti‐rabbit antibodies were used as secondary antibodies (Jackson ImmunoResearch, PA), and the blots were detected using enhanced chemiluminescence (ECL; Dura, Pierce, NJ).
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3

Immunohistochemical Analysis of Proliferation and Inflammation Markers

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Immunohistochemistry staining for Ki‐67, IL‐6, and pY‐STAT3 were performed following the manufacturer's instruction. The primary antibodies were obtained from the following sources: Ki‐67 antibodies (ab16667, Abcam), anti‐IL‐6(ab9324, Abcam), anti‐pY705‐STAT3 (#9145; Cell Signaling Technology, Danvers, MA). In brief, tissue sections were deparaffinized in xylene and rehydrated with ethanol. Tissue sections were then preincubated with 10% normal goat serum in PBS (pH 7.5) followed with incubation with primary antibody overnight at 4°C. Tissue sections were then stained with biotinylated secondary antibody (Vector lab, Burlingame, CA) for 1 h at room temperature, followed by the Vectastain Elite ABC reagent (Vector lab) for 30 min. The peroxidase reaction was developed with diaminobenzidine (DAB kit; Vector lab) and the slides were counterstained with hematoxylin (Sigma).
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4

Immunoblotting and Immunofluorescence Assay

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Polyclonal rabbit anti-PY705-STAT3 (#9145), anti-STAT3 (#4904) and anti-α/β-tubulin (#2148) were purchased from Cell Signaling Technology. For western blotting, the antibodies were probed using secondary donkey anti-rabbit antibodies, conjugated with horseradish peroxidase (Jackson Immunoresearch, #711-035-152). For immunofluorescence, the antibodies were probed using secondary donkey anti-rabbit antibodies conjugated to Rhodamine Red X (Jackson Immunoresearch, #711-295-152). Cell nuclei were fluorescently labelled using DAPI (Sigma-Aldrich, #D9564) or Syto 60 (Life Technologies, #S11342). Purified human IL-10 (#130-093-947), IL-6 (#130-095-365) and pure grade neutralizing anti-IL-6 (#130-096-093) and anti-IL-10 (#130-096-041) antibodies were purchased from Miltenyi Biotech. Nitric oxide synthase inhibitor L-NMMA (#0771, Tocris) was suspended in desionized water at the concentration of 50 mM.
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5

Immunoprecipitation of Phosphorylated STAT3

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Immunoprecipitation (IP) buffer mixed with protease inhibitors was used to lyse the cells. The supernatants were rotated for 12 hours at 4°C treated with 2 μg of the relevant primary antibody (anti-p-Y705-Stat3, 1:1000, #9145, Cell Signaling Technology, Danvers, MA, USA). The supernatants were then rotated with Protein A/G agarose for 2 hours. The immunoprecipitants were washed three times with IP buffer before being eluted and boiled for 10 minutes with SDS sample solution. The immunoprecipitants were subsequently analyzed using western blots (anti-PD-L1, 1:200, sc-518027, Santa Cruz, Dallas, TX, USA).
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6

EGFR Mutant Autophosphorylation Assay

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The pEGFP-N1-EGFR plasmid from our previous studies15 (link),17 (link) was used to generate point mutations. Before transfection, Chinese Hamster Ovary (CHO) cells were grown in high-glucose Dubecco’s Modified Eagle Medium (DMEM) (Cellgro, Manassas, VA, USA) with 10% fetal bovine serum (Bioexpress, UT, USA) without antibiotics at 30% confluency. Transient transfection was then performed using lipofectamine-2000 (Invitrogen, Carlsbad, CA) according to manufacturer’s protocol with WT and mutant EGFR. To detect autophosphorylation, transfected cells were serum-starved in Ham’s F-12 media for 18 h followed by ligand stimulation with EGF (100 ng/mL) (Sigma, St. Louis, MO) for 5 min. Cells were washed with PBS, and lysed with lysis buffer (50 mM Tris-HCL, pH 7.4, 150 mM NaCl, 10% glycerol, 1 mM EDTA, 1 mM sodium orthovanadate, 1% Triton X-100, 1 mM PMSF, and 1× Protease Inhibitor Cocktail Set V, EDTA-free). Total protein was resolved on 10% SDS-PAGE and transferred onto polyvinylidenedifluoride (PVDF) membrane. Western blotting was done using anti-GFP, anti-pY1197-EGFR, anti-FLAG, anti-STAT3, and anti-pY705-STAT3 antibodies (Cell signaling, Danvers, MA). Proteins were detected using chemiluminescent substrate (ECL substrate, Pierce, Rockford, IL).
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7

Antibody Generation and Validation for SIK Kinases

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Antibodies were raised against peptides encompassing amino acids 577–592 or 597–612 of human SIK1 (S306D, bleed 3), amino acids 272–445 of mouse SIK2 (S567D, bleed 3) and amino acids 926–1038 of mouse SIK3 (S373D, bleed 3) in sheep and affinity purified by the antibody production team at MRC-PPU Reagents and Services (https://mrcppureagents.dundee.ac.uk). The following antibodies were used for immunoblotting: horseradish peroxidase-conjugated secondary antibodies (Pierce), anti-HA (Roche), anti-CRTC3 (Abcam), anti-glyceraldehyde 3-phosphate dehydrogenase (GAPDH), anti-nitric oxide synthase (NOS), anti-SIK2, anti-signal transducer and activator of transcription (STAT) 3, anti-pY705-STAT3 and anti-pS246-HDAC4/pS259-HDAC5/pS155-HDAC7 (Cell Signalling Technology).
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8

Fas receptor signaling in EGFR-mediated cell growth

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The sources of antibodies and reagents are as followed: anti-pY291 Fas (prepared as previously described13 and validated for immunoblotting13 and flow cytometry Fig. S8); anti-Src, anti-Yes (R&D Systems); anti-human Fas (C20, for immunoblotting) and anti-Cyclin D1 (Santa Cruz); anti-Fas (Apo1–3, for co-immunoprecipitation) (Enzo); anti-EGFR, anti-pY1068 EGFR, anti-pY705 STAT3, anti-STAT3, anti-pS473 Akt, anti-pT308 Akt, anti-Akt, anti-pErk1/2, and anti-Histone H3 (Cell Signaling Technology); anti-Erk1/2 (Sigma); anti-GAPDH (Calbiochem); horseradish peroxidase conjugated anti-rabbit and anti-mouse (Jackson ImmunoResearch); anti-mouse IgG-Alexa Flour 488 (Life Technology); Recombinant human EGF (Gibco), recombinant amphiregulin (R&D Systems); protein G sepharose beads (Zymed Laboratories); WST-1 (Interchim); Matrigel (BD Bioscience). Lipofectamine RNAiMAX reagent (Invitrogen) was used for siRNA transfection according to the manufacturer’s protocol for reverse transfection.
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9

Immunoblotting Antibody Panel for Murine IL-6

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Murine IL-6 was purchased from ImmunoTools (Friesoythe, Germany). Anti-pY705-STAT3 (#9131), anti-STAT3 (#9139), anti-pERK1/2 (#4370), anti-ERK1/2 (#9102) from Cell Signaling (Danvers, MA), anti-V5 (#R960-25) from Invitrogen (Carlsbad, CA), anti-STAT3 C-20, anti-STAT3 K-15 (#sc-482, #sc-483), anti-ERK1 (#sc-093-G), anti-ERK2 (#sc-154-G), anti-GAPDH (#sc-32233) from Santa Cruz (Dallas, TX), anti-HSP70 (#ADI-SPA-820) from Enzo Life Sciences (Lörrach, Germany), and anti-HA (#H6908) from Sigma-Aldrich (St. Louis, MO) were used for immunoblotting. Anti-rabbit, anti-mouse and anti-goat antibodies conjugated to horseradish peroxidase were ordered from DAKO (Hamburg, Germany).
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10

Investigating PD-L1 Pathway Regulation

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Sodium bicarbonate (NaHCO3), lactic acid, sodium lactate and sodium oxamate were obtained from Sigma Aldrich (St. Louis, MO, USA). The antibodies used in this study were as follows: anti-PD-L1 (Abcam, Cambridge, UK); anti-LDH-A (Santa Cruz Biotechnology, Santa Cruz, CA, USA); anti-pY701-STAT1, anti-STAT1, anti-pY705-STAT3, anti-pS727-STAT3, anti-STAT3 and anti-β-actin (Cell Signaling Technology, Danvers, MA, USA); and anti-HIF-1α (Abbkine, Wuhan, China).
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