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μct evaluation program

Manufactured by Scanco
Sourced in Switzerland

The μCT Evaluation Program is a software tool designed to analyze and visualize data acquired from micro-computed tomography (μCT) imaging systems. The program provides a platform for processing and interpreting μCT scans, allowing users to extract detailed information about the internal structure and composition of various materials and samples.

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7 protocols using μct evaluation program

1

Vascular Perfusion and Micro-CT Imaging

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Animals were perfused with saline at the heart followed by neutral buffered formalin (Thermo Fisher Scientific, Inc.) for 10 min, then with saline to rinse, and lastly MicroFil (Flow Tech Inc., Carver, MA) catalyzed at a viscosity appropriate for small vessels (5 mL lead-based contrast agent : 2.5 mL diluent : 0.25 mL curing agent). Afterwards, perfused mice were carefully stored at 4°C overnight to cure the contrast agent. The following day, mammary fatpad or tumor samples were harvested and stored in D-PBS. Micro-computed tomographic imaging was accomplished using a SCANCO Medical μCT50 (SCANCO USA, Inc., Wayne, PA, USA). μCT image slices were constrained using manual selection of the sample outline and processed with a Gaussian filter at a consistent global threshold via the SCANCO Medical μCT Evaluation Program before 3-dimensional reconstruction [33 (link)].
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2

3D Analysis of Molar Root Morphometry

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The 3D reconstructions of the mandibular were completed using μCT Evaluation Program (Scanco Medical). The reconstructions were resliced to show the widest region of mesial root of the first molar in a sagittal section. The width of mesial root and root canal in the first molars were measured from the tomographically sliced section. The canal/root ratio were calculated for the analysis of the thickness of dentin(30 (link)) (n = 3 for each group).
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3

Evaluating Pg-Induced Calvarial Bone Loss

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To evaluate Pg-induced bone loss, calvarial bone without soft tissues was fixed and then scanned using the Scanco μCT40 desktop cone-beam micro-CT scanner (Scanco Medical AG, Brüttisellen, Switzerland) using μCT Tomography v5.44. The scanning was carried out at 30 μm resolution, 70 kVp, 114 μA with an integration time of 200 ms. Two hundred and ten slices were imaged. Scans were automatically reconstructed into 2-D slices and all slices were analyzed using the μCT Evaluation Program (v.6.5–2, Scanco Medical). The parameters measured were bone volume/total volume (BV/TV), area bone loss (mm2), and sagittal suture area (mm2).
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4

Micro-CT Analysis of Age-Related Bone Loss

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To assess age-related bone loss, mice were euthanized by CO2 inhalation followed by cervical dislocation. Femurs were isolated and fixed in 4% paraformaldehyde, and then scanned using the Scanco μCT40 desktop cone-beam micro-CT scanner (Scanco Medical AG, Brüttisellen, Switzerland). The scanning was performed at 12 μm resolution, 70 kVp, 114 μA with an integration time of 200 ms. For the analysis of cortical bone, femoral midshaft was scanned and 25 slices were imaged. For the analysis of trabecular bone, the scan was started at the distal to the growth plate and consisted 209 slices. The region of interest was outlined starting below growth plate and 100 slices were imaged. The threshold was set at 1033 mgHA/ccm for cortical bone and 547 mgHA/ccm for trabecular bone. Scans were automatically reconstructed into 2-D slices and all slices were analyzed using the μCT Evaluation Program (v.6.5–2, Scanco Medical).
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5

Vascular Contrast Imaging of Tumors

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Animals were perfused with D-PBS at the heart followed by neutral buffered formalin (Thermo Fisher Scientific, Inc.) for 5 min, then with saline to rinse, and MicroFil contrast agent (Flow Tech Inc., Carver, MA) catalyzed at a viscosity appropriate for small vessels (5 mL lead-based contrast agent, 2.5 mL diluent, 0.25 mL curing agent). Perfused mice were carefully stored at 4°C overnight to cure. The following day, tumor samples were excised, and imaged using a SCANCO Medical μCT50 (Scanco USA, Inc., Wayne, PA). μCT image slices were constrained using manual selection of the sample outline and processed with a Gaussian filter at a consistent global threshold via the Scanco Medical μCT Evaluation Program before 3-dimensional reconstruction.[65 ]
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6

Microarchitecture Analysis of Mouse Femurs

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Femurs of WT and 5XFAD female mouse with or without PTH1-34 treatment were detached and fixed overnight in 10% formalin and stored in PBS for further characterization by microCT (µCT). The excised femurs were placed vertically in a 12-mm-diameter scanning holder and scanned using the Scanco μCT40 (Scanco Medical AG). Settings parameters are adjusted as previously described: 12 μm resolution, 55 kVp, and 145 μA with an integration time of 200 ms [13 (link), 32 (link)]. For the cortical analysis, the bone was scanned at the midshaft of the bone for a scan of 25 slices, and the threshold for cortical bone was set at 329. The 3D reconstruction was performed using all outlined slices and analyzed by μCT evaluation program (v.6.5–2; Scanco Medical). Data were obtained on bone volume (BV), total volume (TV), BV/TV, bone density, and cortical thickness for cortical bone. For the trabecular bone, the scan was started at the growth plate and consisted of 211 slices. One hundred slices were outlined from this point, on the inside of the cortical bone, enclosing only the trabecular bone and marrow. The threshold for trabecular bone was set at 245 and the 3D analysis performed on the 100 slices. BV, TV, BV/TV, trabecular bone number (Tb. N), trabecular bone thickness (Tb. Th), and trabecular bone space (Tb. Sp) were obtained for the trabecular bone.
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7

Micro-CT Analysis of Murine Femoral Bone

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Femurs harvested from 8-week-old mice and cleaned of surrounding soft tissues were immediately wrapped with HBSS-soaked gauze and stored at -20 °C until proceeding with μCT scanning and mechanical testing. Once samples were brought to room temperature, the femur and its mid-diaphysis were located with a scout scan, and the mid-diaphyseal cortical bone was analyzed by scanning 1 mm of mid-diaphysis on Scanco μCT50 (Scanco Medical, Switzerland) with 55 kVp intensity, 109 μA current, 6 W energy, and 10 μm resolution. To minimize dehydration of the bones prior to mechanical testing, mid-diaphysis, which cannot be determined once the bone has fractured, was scanned prior to 3-point bending while the epiphysis was scanned afterwards. Following mechanical testing, 2 mm of epiphysis below the growth plate separation was scanned using the same scanning parameters. Cortical bone sections with endosteal and periosteal surfaces automatically contoured were analyzed using the cortical bone analysis algorithm provided in μCT Evaluation Program (Scanco Medical, Switzerland). To assess trabecular parameters, including but not limited to BV/TV (bone volume/total volume), Tb. N. (trabecular number), and Tb. Sp. (trabecular spacing), contours were manually segmented on 100 sections distal to the growth plate. Data were collected from n = 8 mice/group for females and 5-11 mice/group for males.
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