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10 protocols using anti caspase 1

1

Comprehensive Western Blot Protocol for Immunological Markers

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The Western blot protocol used was previously described [7 (link)]. The primary antibodies included anti-TLR4 (Proteintech, China), anti-MyD88 (Proteintech), anti-NF-kB (R&D Systems, U.S.A.), anti-RIPK3 (Proteintech), anti-MLKL (Proteintech), anti-NLRP3 (ZEN BIO, China), anti-Caspase1 (Novus, U.S.A.), anti-Caspase8 (Proteintech), anti-GSDMD (ABclonal, China), anti-IL-1β (R&D Systems), and anti-β-actin (Elabscience, China). An anti–rabbit (or goat or mouse or rat) antibody (ABclonal) were applied to the secondary antibody.
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2

Western Blot Analysis of Inflammatory Proteins

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Total proteins from tissues were extracted in RIPA lysis buffer (Solarbio, China), and a bicinchoninic acid (BCA) protein assay kit (Solarbio, China) was used for evaluating the protein concentration. The sample proteins were separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis and transferred onto polyvinylidene difluoride membranes. The membranes were blocked with 5% non-fat milk in TBST followed by incubating with primary antibody overnight. The primary antibodies were as follows: anti-RIPK3 (1:1,200; Novus Biologicals), anti-NLRP3 (1:400; Novus Biologicals), anti-caspase-1 (1:800; Novus Biologicals), anti- NF-κB/p65 (1:1,000; Cell Signaling Technology, CST), anti-β-actin (1:5,000; Proteintech Group, PTG), and anti-glyceraldehyde 3-phosphate dihydrogen (GAPDH) (1:5,000; Proteintech Group, PTG). After being washed with Tris Buffered Saline with Tween (TBST), the membranes were incubated with goat anti-rabbit second antibody for 1.5 h. Finally, the enhanced chemiluminescence (ECL; Thermo Scientific) was used to visualize immunoblots, and the densities of the relative target proteins were measured using ImageJ. The GAPDH or β-actin was chosen as the internal reference control.
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3

Hippocampal Protein Extraction and Western Blotting

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The rat hippocampi were homogenized and placed in a radioimmunoprecipitation assay lysis buffer containing protease and phosphatase inhibitors and phenylmethylsulfonyl fluoride. The samples were lysed on ice for 30 minutes and centrifuged at 13,000 r/min for 10 minutes at 4°C, and the supernatant was aspirated. The bicinchoninic acid assay was performed to determine the protein concentration. The samples were then stored at −80°C until further use. Western blotting was performed using standard protocols [33 (link)]. The membranes were incubated overnight with primary antibodies, including anti-NLRP3 (1:500, Novus, USA), anti-GSDMD (1:1000, Abcam, UK), anti-caspase-1 (1:1000, Novus, USA), and anti-caspase-11 (1:200, Novus, USA), and then with the appropriate secondary antibodies. ImageJ software was used to measure the gray values of the target bands.
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4

Inflammasome Activation in Macrophages

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A total of 1 × 106 pRMØs from WT and Pml−/− mice were cultured in complete IMDM. The next day, the O/N medium was replaced, and the cells were stimulated with LPS (1 μg/mL) for 3 h and then with the inflammasome activator 5 mM ATP (1 h) or 10 μM nigericin (1 h). The conditioned cell culture media were then collected and concentrated using Pierce Protein Concentrators PES 10 K MWCO (Thermo Fisher) and centrifuged (3000 g for 15 min). Aliquots of media (10 μl) were analyzed by SDS–PAGE and immunoblotting (Ponceau S staining was used as a loading control). The levels of cleaved Caspase-1 and cleaved IL-1β were detected with anti-Caspase-1 (Novus Biological, #14F468) and anti-IL-1β (Cell Signaling Technology, #12242) antibodies, respectively.
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5

Cytosolic and Nuclear Protein Extraction for Western Blotting

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Western blotting was performed as described previously (25 (link)). The cytosolic and nuclear fraction preparation was performed using ExKine™ Nuclear and Cytoplasmic Protein Extraction Kit (Abbkine, China) according to the manufacturer’s instructions. The primary antibodies used were as follows: anti-NLRP3 (1:1,000; Cell Signaling, Danvers, MA, USA), anti-XIAP (1:1,000; Enzo Life Sciences, Farmingdale, NY, USA), anti-ASC (1:1,000; Abbkine), anti-caspase-1 (1:1,000; Novus Biologicals), anti-TLR4 (1:1,000; Bioworld Technology), anti-myeloid differentiation factor88 (MyD88, 1:1,000; Cell Signaling), anti-NF-κB (1:1,000; Cell Signaling), anti-Lamin B1 (1:1,000; Cell Signaling), anti-β-tubulin (1:1,000; Abbkine), and anti-β-actin (1:5,000; Enzo Life Sciences). The membranes were then washed thrice with Tris-buffered saline with Tween-20 (TBST) and incubated with secondary antibodies conjugated with horseradish peroxidase. Immunopositive bands were enhanced with chemiluminescence (Amersham Pharmacia, Piscataway, NJ, USA) and visualized using the Fusion Solo X (Vilber Lourmat, Collegien, France).
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6

Subventricular Zone Protein Analysis

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The subventricular zone (SVZ) tissue was separated and homogenized to collect the protein samples at 3 days after hemorrhage. Equal amounts of protein samples (20 μg) were loaded on SDS-PAGE gels, electrophoresed, and transferred onto a polyvinylidene difluoride membrane. The membrane was blocked and incubated overnight at 4°C with the following primary antibodies: anti-ZO-1 (1 : 1000; Abcam, USA), anti-NLRP3 (1 : 1000; Abcam, USA), anti-Caspase1 (1 : 1000; NOVUS, USA), anti-IL1beta (1 : 1000; GeneTex, USA), anti-Atg5 (1 : 1000; ZEN-BIO, China), anti-LC3B (1 : 1000; ZEN-BIO, China), anti-p62 (1 : 1000; ZEN-BIO, China), anti-pAMPK (1 : 1000; CST, USA), anti-AMPK (1 : 1000; CST, USA), anti-ULK1 (1 : 1000; CST, USA), anti-Beclin-1 (1 : 1000; CST, USA), and anti-β-actin (1 : 1000; CST, USA). Appropriate secondary antibodies (1 : 3000, CST; 1 : 5000, abcam) were selected to incubate with the membrane for 1 h at room temperature. The bands were probed with an ECL Plus chemiluminescence regent Kit (ThermoFisher, USA) and visualized with the image system (Bio-Rad, USA). Relative density of the protein immunoblot images was analyzed by Image J software (NIH, USA).
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7

Rat Brain Tissue Preparation and Immunostaining

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Under deep anesthesia, rats were sacrificed by transcardial perfusion with 100 ml normal saline followed by 50 ml 4% neutral buffered paraformaldehyde. Brains were fixed in 4% neutral buffered paraformaldehyde for 24 h at 4°C followed by 25% and 30% sucrose solution until brains were dehydrated fully. Then, brains were cut into 10 μm thick coronal sections using a cryostat (LM3050S, Leica, Germany) after being frozen at -80°C. Slides were washed with 0.01 M of PBS 3 times for 10 min and then incubated in 0.3% Triton X-100 for 30 min at room temperature. After being blocked with 5% BSA for 1 h at room temperature, the sections were incubated with primary antibody at 4°C overnight as follows: anti-CD31 (1: 200; Abcam, USA), anti-ZO-1 (1 : 200; Abcam, USA), anti-Caspase1 (1 : 200; NOVUS; USA), anti-IL1beta (1 : 400; GeneTex, USA), anti-Iba1 (1 : 200; Genetex, USA), anti-CD68 (1 : 200; Abcam, USA), anti-NLRP3 (1 : 200; Abcam, USA), anti-Atg5 (1 : 100; ZEN-BIO; China), anti-p62 (1 : 100; ZEN-BIO; China), and anti-NeuN (1 : 200; Abcam, USA). Then, the sections were washed with 0.01 M PBS and incubated with appropriate fluorescence-conjugated secondary antibodies (1 : 400; Invitrogen, USA) for 2 h at room temperature. The slides were observed and photographed under a fluorescence microscope (LSM880; ZEISS, Germany).
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8

NLRP3 Inflammasome Protein Analysis

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Isolated cells obtained from lung lavage fluid were lysed directly in RIPA buffer containing HALT™ protease inhibitors (Life Technologies, Carlsbad, CA, USA). Whole lung lavage cells from 3 mice were pooled for each N. Lysates were run on 4–12% Bis-Tris SDS-PAGE gels. Anti-NLRP3 antibodies were obtained from R&D Systems. Anti-ASC, Anti-caspase-1, and anti-pro-IL-1β antibodies were obtained from Novus Biologicals (Littleton, CO, USA). The secondary antibodies were donkey anti-rabbit conjugated to horseradish peroxidase (BioLegend, San Diego, CA, USA).
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9

Immunostaining of NLRP3 and Caspase-1

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NLRP3 subunit and caspase-1 were immunostained using monoclonal anti-NLRP3 (R&D Systems, Minneapolis, MN, USA) and anti-caspase-1 (for activated caspase-1; Novus Biologicals, Centennial, CO, USA) at a 1:500 dilution.
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10

Protein Expression Analysis of NLRP3 and Caspase-1

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Protein expression of NLRP3 and caspase-1 was determined using protein analysis of thoracic aortas of in vivo and in vitro all groups. Samples were homogenized in lysis buffer and proteins were collected. Proteins (30 μg) were separated by electrophoresis on 10 or 12% polyacrylamide gels, transferred to 0.22 μm nitrocellulose membranes and blocked using 5% bovine serum albumin (BSA) in Tris buffered saline (TBS) and 0.1% Tween 20 for 1 h. Primary antibodies were incubated overnight at 4°C as follows: anti-NLRP3 (1:500 dilution; R&D Systems), anti-caspase-1 (1:1,000 dilution; Novus Biologicals), anti-β-actin-peroxidase (1:5,000 dilution; Sigma-Aldrich).
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