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7 protocols using ab7064

1

Immunofluorescence Analysis of SKBR3 Cells

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For immunofluorescence evaluation on cancer cells, SKBR3 cells (3 × 104/well) were plated in 6-well plates that were previously fitted with four cylindrical glasses at the base. After 24 h, cells were fixed with a 1:1 solution of methanol/acetone for 10 min at a temperature of −80 °C and then incubated with 1% bovine serum albumin in DPBS for 1 h. Cells were firstly incubated with the primary antibody Actin, (1:50) for 2 h at room temperature (Sigma-Aldrich Cat# A2228), and afterwards with a FITC labeled secondary mouse antibody for 1 h at room temperature (Abcam Cat# ab7064). The KCTD15 primary antibody (1:50) (GeneTex Cat# GTX50002) was incubated simultaneously. A PE-labelled secondary rabbit antibody (Sigma-Aldrich Cat# P9537) was used for the detection of KCTD15. Nuclei were stained in blue with DAPI (1:30,000) for 10 min at room temperature (Thermo Fisher Scientific Cat# D1306). For immunofluorescence and phase-contrast images, cells were pictured using an automated upright microscope system (Leica DM5500 B) coupled with Leica Cytovision software.
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2

Visualizing Protein Localization in Plant Nuclei

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Nuclear immunofluorescence experiments for AtMORC4/7-MYC tagged lines were performed based on the method described in [25 (link)]. Leaves from three-week old plants were fixed in 4% paraformaldehyde in TRIS buffer (10 mM TRIS pH 7.5, 10 mM EDTA, and 100 mM NaCl) for 20 minutes and washed twice in TRIS buffer. Leaves were chopped in 200–400 microliters lysis buffer (15 mM TRIS pH 7.5, 2 mM EDTA, 0.5 mM spermine, 80 mM KCl, 20 mM NaCl, and 0.1% Triton X-100) and filtered through a 3 μM cell strainer (Corning, #352235). 5 μL of nuclei suspension was added to 12 μL of sorting buffer (100mM TRIS pH 7.5, 50mM KCl, 2mM MgCl2, 0.05% Tween-20, and 20.5% sucrose) and air dried on chloroform dipped microscope slides for two hours and then post-fixed in 4% paraformaldehyde in PBS for 20 minutes. Slides were washed three times in PBS and incubated in blocking buffer (3% BSA, and 10% horse serum in PBS) for 30 minutes at 37°C. Nuclei were incubated at 4°C overnight in mouse monoclonal antibody against c-Myc (9E10, Abcam ab32; 1:200). Slides were washed in PBS and incubated with goat anti-mouse FITC antibody (Abcam, ab7064; 1:200) for 90 minutes at room temperature. Following PBS washes, nuclei were counterstained and mounted in Vectashield mounting media with DAPI (Vector, H-1200). Nuclei were analyzed with a Zeiss LSM 710 Confocal microscope at 63X or 100X magnification using Zen software.
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3

Immunofluorescence Detection of KCTD15 in B-ALL

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BM smears of B-ALL patients were air-dried overnight and then fixed at −80 °C for 15 minutes with a −80 °C pre-cooled solution of Methanol-Acetone 1:1 (v/v). Subsequently, the slides were subjected to blocking with solution of 3% (w/v) BSA in PBS pH 7.4 at Room Temperature (RT). Anti KCTD15 monoclonal antibody was diluted 1:100 in a solution of PBS + 1% (w/v) BSA and then all slides were incubated for 4 h at + 4 °C. After three wash steps in PBS for 5 minutes each, FITC- conjugated anti-mouse secondary antibody (ab7064, Abcam, UK) diluted 1:200 in a solution of PBS + 1% (w/v) BSA was incubated for 1 h at 4 °C in the dark. After additional three wash steps in PBS, a solution of 4′,6-Diamidino-2-Phenylindole, Dihydrochloride (DAPI, Thermo Fischer Scientific D1306) diluted 1:35000 in PBS was used for coloring of the nuclei.
Images were obtained using an automated upright microscope system (Leica DM5500 B) coupled with Leica Cytovision software.
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4

Immunofluorescence Staining of GSDMD

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H9C2 cells were seeded and climbed on the 6-well plate. When the cell fusion was about 80%, the cells were treated with H/R, transfection and drug treatment. Then, the cells were fixed by paraformaldehyde, permeabilized by PBS containing 0.1% TritonX-100, and blocked by BSA. Then, the sections were incubated with primary antibody against GSDMD (1/200; ab219800; Abcam, USA), followed by FITC-labeled fluorescent secondary antibody (1/200; ab7064; Abcam, USA). After the nucleus was stained with 1 μg/ml DAPI for 10 min, images were investigated under a confocal laser microscope.
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5

Multiparametric Flow Cytometry for KCTD15 Analysis

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Flow cytometry experiments with a minimum of 10.000 recorded events were performed using the Cytomics FC500 except in case of Cell Trace Staining on stimulated lymphocytes where the Cytoflex V2-B4-R2 (Beckman-Coulter, CA, USA) instrument was used. Routinely control of instrument sensitivity was performed and no change in instrument sensitivity throughout the study was seen. Intracellular or combined intracellular plus surface staining was performed by the use of PerFix Expose kit (B26976, Beckman Coulter,) according to manufacturer instruction. Data were analyzed using Kaluza analysis software version 2.1 (Beckman-Coulter, CA, USA). The following monoclonal antibodies were used for FCM experiments: anti KCTD15 (GTX50002, Genetex International, USA), CD19 (CD19-RD1, 6603024 Beckman Coulter) and CD45 (CD45-PC5, IM2652U Beckman Coulter). FITC- conjugated anti mouse secondary antibody (ab7064, Abcam, UK) was used for anti-KCTD15 detection.
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6

Immunofluorescence Staining of LAMP1 and Cathepsin D

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BC and control cells were cultured in glass-bottomed 12-well plates at 37°C in the presence of 5% CO2 for 48 h. Cells on glass coverslips were washed three times with PBS and fixed with methanol (1 mL). After two rounds of washing with PBS, the cells were blocked with 5% albumin in PBS for 16 h at 4°C and then incubated with the primary antibodies in 5% albumin in PBS for 2 h at 37°C. Primary antibodies against LAMP1 (ab25630, Abcam, Cambridge, UK) and cathepsin D (#2284, Cell Signaling Technology, Danvers, MA, USA) were diluted 1 : 20 and 1 : 200, respectively. After three rounds of washing with 0.05% triton in PBS for 5 min, the cells were incubated with the relevant secondary antibody in 5% albumin in PBS for 30 min at 37°C in the dark. The secondary antibodies, fluorescein isothiocyanate (FITC) goat anti-mouse IgG (ab7064, Abcam) and Alexa Fluor 555 donkey anti-rabbit IgG, were diluted 1 : 200. After three, 10 min rounds of washing with 0.05% triton in PBS in the dark, the cells were mounted with ProLong Diamond Antifade Mountant with DAPI (Molecular Probes; Thermo Fisher Scientific). Finally, the cells were visualized using a TCS SP8 confocal microscope (Leica, Wetzlar, Germany).
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7

Doxorubicin Delivery in MDA-MB-231 Cells

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MDA-MB-231 cells were treated for 24 h with 1µmol L−1 free Dox or 1.13 mmol L−1 Dox loaded Fmoc-FF/(FY)3 hydrogels and Fmoc-FF/(FY)3 nanogels. Cells were fixed at -20 °C for 15 minutes with a -80 °C pre-cooled solution of methanol/acetone (1/1, v/v). Subsequently, cells were subjected to blocking with solution of 3% (w/v) BSA in PBS pH 7.4 at room temperature (RT). Anti B-actin (A2228, Sigma Aldrich) monoclonal antibody was diluted 1:200 in a solution of PBS + 1% (w/v) BSA and then all slides were incubated for 4 h at + 4°C. After three washing steps in PBS for 5 minutes each, FITC-conjugated anti-mouse secondary antibody (ab7064, Abcam, UK) diluted 1:400 in a solution of PBS + 1% (w/v) BSA was incubated for 1 h at 4°C in the dark. After additional three washing steps in PBS, a solution of 4′,6-Diamidino-2-Phenylindole, Dihydrochloride (DAPI, Thermo Fischer Scientific D1306) diluted 35,000-fold in PBS was used and it was left to act for 10 minutes at RT in the dark to color the nuclei. Images were obtained using an automated upright microscope system (Leica DM5500 B) coupled with Leica Cytovision software.
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