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5 protocols using microscope cover glasses

1

Laser-Induced Choroidal Neovascularization

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C57BL/6J mice underwent anesthesia using a 4:1 mixture of Zoletil (Virbac, Carros Cedex, France) and xylazine (Bayer Healthcare, Leverkusen, Germany) with added topical 0.5% proparacaine (Alcaine; Alcon, Geneva, Switzerland) for topical anesthesia. Pupils were dilated by Tropherine eye drops (0.5% tropicamide and 0.5% phenylephrine hydrochloric acid; Hanmi Pharm, Seoul, Republic of Korea). A slit-lamp delivery system (SL-1800; NIDEK, Tokyo, Japan) with a green laser photocoagulator (GYC-500; NIDEK) (532 nm laser, 50 μm spot size, 0.1 s duration, 200 mW) was used to generate three laser spots in each eye using 12 mm-diameter microscope cover glasses (Paul Marienfeld GmbH, Lauda-Königshofen, Germany) as contact lenses while protecting the optic nerve with a lubricant (hypromellose; SAMIL, Seoul, Republic of Korea). Successful Bruch’s membrane disruption was indicated by gaseous bubbles. After photocoagulation, intravitreal injections of GST, mCXCR3-WT (2 µg/µL), mCXCR3-S2 (2 µg/µL), and aflibercept (EYLEA, 2 µg/µL; Bayer Healthcare) were administrated. Only spots with accompanying bubbles were included in the study.
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2

Monoclonal Antibodies and CF Correctors

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The following monoclonal antibodies (mAb) or polyclonal antibodies were used for Sigma), triton X-100 (X100; Sigma) and glycerol (453751; CARLO ERBA). The following were used for microscopy: microscope slides (J1800AMNZ; ThermoFisher) and microscope cover glasses (0107052; Marienfeld).
The following CF correctors or potentiators were used: VX-809 (936727-05-8; AdooQ® Bioscience), VX-770 (S1144; Selleckchem), VX-661 (A12519; AdooQ® Bioscience) and VX-445 (S8851; Selleckchem).
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3

RNA FISH Protocol for Cellular Localization

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Cells were cultivated on 13×13 mm #1 microscope cover glasses (Marienfeld GmbH & Co. KG, Lauda-Königshofen, Germany) in 24-well plates to a confluency of 80-90% and treated as indicated. Further processing followed manufacturer's instructions available online at www.biosearchtech.com/stellarisprotocols (11.04.2013). Briefly, cover glasses were rinsed with PBS and cells were fixed (3,7% formaldehyde, 1x PBS) for 10 min at room temperature, followed by two washes with PBS (room temperature). To permeabilize the cellular membrane 70% EtOH was added for overnight incubation at 4°C. EtOH was removed, cells were equilibrated with washing Buffer (5 min, room temperature) and respective RNA FISH probe mix was added for overnight hybridization at 37°C in a humidified chamber. Hybridization mix was aspirated; cells were washed twice with washing buffer (20 min, 37°C) and rinsed with 2xSSC (room temperature). Cover glasses were placed on glass slides with VECTASHIELD® antifade mounting medium (Vector laboratories) including DAPI and analyzed as described above.
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4

Immunofluorescence Staining of p65 and β-Tubulin

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Microscope coverglasses (Marienfeld GmbH & Co. KG, Lauda-Königshofen, Baden-Württemberg, Germany) with a diameter of 12 mm were coated with 10% poly-l-lysine (Santa Cruz) in water and washed three times with phosphate buffered saline (PBS) in a 24-well plate before cells were seeded onto them. The cells were fixed for 15 min in 4% paraformaldehyde in PBS. The fixated cells were washed two times with PBS and then immersed in 0.5% Triton X-100 in PBS for 3 min to permeabilize the cells, followed by three washes with PBS. The cells were blocked using PBS with 5% normal donkey serum (NDS) overnight at 4 °C, followed by incubation with rabbit anti-p65 (sc372, Santa Cruz) and mouse anti-β-tubulin (T8328, Sigma) at a 1:100 dilution in PBS with 5% NDS for 1 h at 37 °C. After three washes with 0.05% Tween-20 in PBS (PBST), the cells were incubated with secondary antibodies conjugated with different fluorophores at a 1:200 dilution in PBS with 5% NDS for 30 min at room temperature. Finally, the cells were washed three times with PBST, and then the cover glass was transferred onto a small drop of VECTASHIELD antifade mounting medium containing DAPI (Vector Laboratories, Burlingame, CA, USA) on a microscope slide. The cells were examined with a confocal LSM (laser scanning microscope) 710 microscope (Carl Zeiss, Oberkochen, Baden Württemberg, Germany).
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5

FRET-based cellular uptake assay

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Lumi4(Tb)-His6 and QD625 were incubated in DMEM-buffered medium at room temperature for 30 min. Then, CPP was added for an additional 30 min. HeLa cells were seeded on microscope cover glasses (Marienfeld, 0111520) at 105 cells/ml and left overnight for adhesion. Cells were then rinsed three times with PBS, and CPP-QD-Tb solutions were added. Cells were incubated for 3 hours at 37°C and 5% CO2. After incubation, cells were washed three times with PBS and fixed with 4% paraformaldehyde in PBS for 10 min. Cells were rinsed twice with PBS and mounted onto glass slides with a drop of Fluoro-Gel (Electron Microscopy Sciences, 17985-10) mounting medium. For FRET efficiency control experiments that account for the Tb spectral crosstalk to the Tb-to-QD detection channel, A549 cells were incubated with a primary antibody against anti–E-cadherin and a secondary antibody labeled with Lumi4(Tb).
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