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Ampflstr profiler plus kit

Manufactured by Thermo Fisher Scientific
Sourced in United States

The AmpFLSTR-Profiler Plus kit is a commercially available DNA profiling system used for human identification purposes. The kit enables the simultaneous amplification and detection of 15 different short tandem repeat (STR) loci, which are used in forensic DNA analysis. The kit provides a standardized and validated method for generating DNA profiles from biological samples.

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7 protocols using ampflstr profiler plus kit

1

Melanoma Cell Lines from Patient Samples

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Patient Ma-Mel-48 presented with melanoma stage II in December 2000 at the age of 85 years. Progression to stages III and IV was diagnosed in October 2001 and June 2002, respectively. The patient was treated with temozolomide at the beginning of 2003 but never received immunotherapy. In September 2003, the patient died. Patient Ma-Mel-100 presented with melanoma stage II in January 1998 at the age of 72 years. Progression to stage III was diagnosed in September 2002. From February 1998 until September 2002, the patient received adjuvant IFNα therapy. In September 2005, the patient died.
Samples including tumor tissues and peripheral blood mononuclear cells (PBMC) were collected after approval by the institutional review board and patient informed written consent. Tissues were mechanically divided for cryopreservation and generation of the corresponding cell lines. Small tissue pieces were distributed in cell culture dishes, and outgrowing cells were split for the first time at 90% cell confluence. Melanoma cell lines were cultured in RPMI-1640 medium supplemented with glutamine, 10% FCS, and penicillin/streptomycin. Cells were cultured at 37°C in a 5% CO2 atmosphere. Cell lines were authenticated by genetic profiling at the Institute for Forensic Medicine (University Hospital Essen) using the AmpFLSTR-Profiler Plus Kit (Applied Biosystems) and routinely tested every 6 months.
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2

Melanoma Cell Culture and IFN Treatment

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Peripheral blood samples and tumour tissues were collected after written informed patient consent with institutional review board approval. Melanoma cell lines were established from excised metastatic lesions. Cell lines were confirmed to be mycoplasma-free in monthly intervals and authenticated by genetic profiling on genomic DNA at the Institute for Forensic Medicine (University Hospital Essen) using the AmpFLSTR-Profiler Plus kit (Applied Biosystems). Melanoma cells were cultured in RPMI1640 or DMEM medium with L-glutamine (Gibco/Life technologies) and 10% fetal calf serum. Cells were seeded and rested overnight followed by addition of IFNγ (500 U ml−1, Boehringer Ingelheim) or IFNα2b (1,000 U ml−1, Essex Pharma) and incubation for indicated periods.
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3

Multiplex STR Profiling with Amelogenin

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Nine autosomal STRs and the sex-determining marker amelogenin were simultaneously co-amplified by using the AmpFlSTR Profiler Plus Kit (Applied Biosystems, USA) according to the manufacturer`s instructions. Results were analyzed on an ABI Prism 3130XL Genetic Analyzer (Applied Biosystems, USA) at the SB RAS Genomics Core Facility (Novosibirsk, Russia).
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4

Quantitative Chimerism Monitoring Post-Transplant

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Quantitative chimerism monitoring was performed by PCR of short-tandem repeats for sorted CD3+ T and CD19+ B lymphocytes of bone marrow every month after transplant within the first 6 months[16 (link)]. The AmpFlSTR Profiler Plus Kit (Applied Biosystems, USA) and ABI PRISM 3130 genetic analyzer were used for amplifications and analyzed, respectively [16 (link)].
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5

STR Profiling for Genetic Analysis

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Nine autosomal STRs and the sex-determining marker amelogenin were simultaneously co-amplified by using the AmpFlSTR Profiler Plus Kit (Applied Biosystems, USA) according to the manufacturer`s instructions. Results (see S7 File) were analyzed on an ABI Prism 3130XL Genetic Analyzer (Applied Biosystems, USA) at the SB RAS Genomics Core Facility (Novosibirsk, Russia, www.sequest.niboch.nsc.ru).
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6

Establishment and Characterization of Melanoma Cell Lines

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Tumor tissues were collected after written informed consent. Studies on human material were approved by the institutional review board. Melanoma cell lines (Ma-Mel-47, Ma-Mel-61a, Ma-Mel-63a, Ma-Mel-86c, UKE-Mel-164a) were established from metastatic lesions, as previously described.16 25 26 (link) Cells were confirmed to be mycoplasma-free in monthly intervals and authenticated by genetic profiling on genomic DNA at the Institute for Forensic Medicine (University Hospital Essen) using the AmpFLSTR-Profiler Plus kit (Applied Biosystems). Melanoma cell lines were cultured in RPMI1640 medium supplemented with 10% (v/v) fetal calf serum (FCS) and penicillin/streptomycin except for UKE-Mel-164a, maintained in Dulbecco's Modified Eagle Medium (DMEM) medium supplemented with 10% FCS, penicillin/streptomycin, 1% non-essential amino acids and 1% sodium pyruvate. All cells were grown at 5% CO2, 37°C.
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7

Melanoma Cell Line Clones Resistant to CTL

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The T2 lymphoblastoid cell line as well as the human melanoma cell lines Ma-Mel-91 cells (Melan-A/MART-1, HLA-A*0201), UKRV-Mel-15a (Melan-A/MART-1+, HLA-A*0201), Ma-Mel-63a (Melan-A/MART-1+, HLA-A*0201) and immune selected cell clones derived from UKRV-Mel-15a or Ma-Mel-63a were cultivated in RPMI supplemented with 10% fetal bovine serum (Biochrom AG, Germany). Authentication of these cell lines was ensured by genetic profiling on genomic DNA at the Institute for Forensic Medicine (University Hospital Essen) using the AmpFLSTR-Profiler Plus kit (Applied Biosystems)49 (link). To obtain UKRV-Mel-15a or Ma-Mel-63a clones resistant to lysis by HLA-A*0201-restricted Melan-A/MART-126-35-specific CTL, melanoma cells were co-cultured for 5 h with a Melan-A/MART-126-35-specific CTL clone raised against the ELAGIGILTV mutant peptide at a ratio of 1:50. Resistant melanoma cells were kept in culture for two weeks, followed by one or two additional rounds of co-incubation with Melan-A/MART-1-specific CTL. UKRV-Mel-15a and Ma-Mel-63a cells were then cloned by limiting dilution at 0,3 cells/well in 96 well plates and single clones were expanded for further analysis.
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