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28 protocols using h1 hesc

1

Maintaining Human Embryonic Stem Cells

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H1 hESC (WiCell) were cultured on Geltrex™-coated (Gibco) plates and maintained in mTeSR Plus media (STEMCELL Technologies). Media was changed every day or every other day. Cells were passaged using ReLeSR (STEMCELL Technologies) to maintain at 80% confluency. Cultures were maintained in incubators with 5% CO2 at 37 °C.
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2

CRISPR-Engineered FMR1 Knockout hESC Lines

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The cell lines used in this study are H1/WA01 hESC (WiCell, Wisconsin) and isogenic FMR1KO hESC lines generated by CRISPR/Cas9 targeting exon 3 of FMR1 gene in the H1 hESC line. Details of the generation of FMR1KO hESC lines are described in Utami et al., BioRxiv 2019 [17 ]. Two control (HEL11.4 and HEL23.3) and two FXS (HEL69.5 and HEL70.3) human-induced pluripotent stem cells (hiPSCs) were included for further assessment of the protein synthesis phenotypes and metformin treatment effects [18 ].
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3

Mesenchymal Stem Cell Induction from hESCs

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hESC lines (H1 hESCs, WiCell Research Institute) were cultured as we previously reported [13 (link), 14 (link)]. Briefly, the cells were seeded on 12-well plate (Corning) coated with matrigel (BD Bioscience) in mTeSR1 medium (Stem Cell Technologies) at 5% CO2 and 37 °C. For MSC induction, hESCs were split into single cells with Accutase (Gibco), then seeded in mTeSR1 medium with Y27632 (10 nM) (Sigma) addition on a growth factor reduced gel (GFR, Stem Cell Technologies)-coated 6-well plate at a density of 1.3 × 104 cells/mL. After 2 days, the spent medium was replaced by DMEM/F12 basal medium (Hyclone) containing 5% fetal bovine serum (Gibco), 1% penicillin-streptomycin (Gibco), 1% l-glutamine (Gibco), and 10 nM small molecule (Targetmol) from day 0 to day 7; then, cells were transferred into an adherent culture plate in DMEM/F-12 medium supplemented with 10% FBS, 1% penicillin-streptomycin (Gibco), 1% l-glutamine (Gibco), and 5 nM Y27632 (Sigma). Cells were cultured for another 7 days, and media were changed every 2 days in the entire process.
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4

H1 hESC Culture and Maintenance

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We maintained H1 hESCs (WiCell) on Matrigel (Corning) in mTESR1 media (StemCell Technologies), authenticated them by karyotype analysis (Cell Line Genetics), and periodically tested them for sterility and mycoplasma contamination (IDEXX BioResearch). We dissociated adherent cultures with StemPro Accutase Cell Dissociation Reagent (Life Technologies), and then centrifuged the cells (220×g, 3 min) and the dissociation solution was removed.
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5

H1 hESC Culture and Maintenance

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We maintained H1 hESCs (WiCell) on Matrigel (Corning) in mTESR1 media (StemCell Technologies), authenticated them by karyotype analysis (Cell Line Genetics), and periodically tested them for sterility and mycoplasma contamination (IDEXX BioResearch). We dissociated adherent cultures with StemPro Accutase Cell Dissociation Reagent (Life Technologies), and then centrifuged the cells (220×g, 3 min) and the dissociation solution was removed.
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6

Human Embryonic Stem Cell Differentiation Protocols

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H1 hESCs (Wicell) were cultured on Biomatrix in feeder-free culture conditions with mouse embryonic fibroblast-conditioned media (MEF-CM) (Tan et al., submitted for publication). Briefly, human embryonic stem medium [80% Dulbecco's modified Eagle's medium-Ham's F-12 medium, 20% Knockout serum replacement (Invitrogen), 1 mM L-glutamine, 0.1 mM β-mercaptoethanol, 1% nonessential amino acids and 4 ng/ml human basic fibroblast growth factor (bFGF)] was incubated with mitomycin C-inactivated MEFs overnight, with an additional 4 ng/ml of bFGF before hESC feeding. Cultures were passaged every 5–7 days, before they became confluent. Differentiation was induced via the addition of specific factors into MEF-CM, along with the removal of bFGF. For trophoblast induction, cultures were incubated in MEF-CM with 100 ng/ml of recombinant BMP4 (R&D Systems) and 20 μM of FGFR-inhibitor SU5402 (Calbiochem) for 1–5 days (30 (link)). For retinoid differentiation, cultures were incubated in MEF-CM with 10 μM of synthetic retinoid EC23 (Reinnervate) for 1–5 days (31 (link)).
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7

Culturing Human Embryonic Stem Cells

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In this study, H1-hESCs (WiCell Research Institute, Madison, WI) were cultured on mitomycin-C inactivated-murine embryonic fibroblasts (MEFs) using hESC medium as described previously [31 (link), 32 (link)]. Briefly, the hESC medium consisted of Dulbecco's modified Eagle's medium (DMEM)/Ham's F12 (1 : 1) supplemented with 20% Knockout Serum Replacement (KO-SR, Gibco), 1% (vol/vol) nonessential amino acids, 1 mM L-glutamine (Gibco), 4 ng/mL basic fibroblast growth factor (bFGF, Invitrogen), and 0.1 mM β-mercaptoethanol (Sigma). Media were changed every other day and passaged every 6-7 days using 1 mg/mL collagenase type IV (Gibco) for 5 minutes, followed by manual dissociation to small clumps and seeding onto MEF-seeded plates.
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8

Culturing H1 hESCs in Hypoxic Conditions

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H1 hESCs were purchased from WiCell in Wisconsin (WA01) and cultured in TeSR medium in Matrigel-coated 10-cm plates. Cells were grown at 5% O2 tension to better mimic the conditions inside the human body and reduce oxidative damage as a result of normoxic conditions. To passage the cells, and just prior to collection of RNA and DNA, cells were gently treated with 2 µg/mL Dispase mixed with Dulbecco's Modified Eagle Medium/F12, washed with phosphate buffered saline (PBS), and scraped off the plate using a glass pipette. DNA and RNA were then isolated with standard phenol chloroform and Trizol methods.
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9

Maintenance of H1 hESCs in Feeder-Free

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H1 hESCs (WiCell) were maintained in feeder free conditions as previously described [17] (link).
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10

Generation and Characterization of Human Pluripotent Stem Cells

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H1 hESCs were purchased from WiCell Institute. The H1 SOX2-P2A-H2B-tdTomato reporter line was generated by knocking in a P2A-H2B-tdTomato transgene before the stop codon at the SOX2 gene locus using CRISPR/Cas9-based HDR38 . The MSK-SRF001-iPSCs were generated from urine cells of an apparently healthy donor using a previously reported method39 (link). The 972-iPSCs were previously generated from an HGPS patient’s fibroblast line purchased from Coriell Institute (AG01972)40 (link), and the 756-iPSCs were generated from a PD patient’s fibroblast line purchased from Coriell Institute (ND29756). All the hPSCs have been fully characterized and are routinely cultured on Matrigel (Fisher Scientific 08-774-552) in Stemflex Medium (Thermo Fisher A3349401). Cells were maintained at 37 °C with 5% CO2. For regular passaging, cells were detached and passaged with 0.5 mM EDTA (Fisher Scientific MT-46034CI) at room temperature for 5 min.
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