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137 protocols using celltiter glo 3d

1

Optimized 3D Cell Viability Assay

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Timing: 45 min (per multi-well plate)

Here, we describe the procedure for cell viability measurements using Cell Titer Glo 3D (Promega). In this protocol, the readout is performed at 2 timepoints, T0 (day of plating) and T120h (5 days, endpoint experiment).

Make sure the Cell Titer Glo 3D (Promega) and the multi-well screening plates are at 21°C before starting.

Visually inspect plates to ensure that the organoids in the wells containing the vehicle control have grown as expected. (Figures 2B and 2C) Troubleshooting 5

Prepare and clean the tubing of the multidrop Combi as illustrated in step 32.

CRITICAL: Use solutions stored at 16°C–24°C since temperature fluctuations can interfere with Cell Titer Glo 3D luminescence readout.

Use the multidrop combi system to dispense 40 μL of Cell Titer Glo 3D (1:1) in each well.

CRITICAL: During dispensing, protect the tubing from light exposure by covering with aluminum foil.

Use a horizontal shaker to agitate the multi-well plate(s) for 5 min at 600 rpm.

CRITICAL: Prior to shaking, wipe the lid of the plate from any condensed water, as this may cause bubble formation and interference with the accuracy of the readout.

Incubate the multi-well plate(s) covered with aluminum foil for 25 min at 16°C–24°C.

Measure the luminescence signal per well using a suitable reader (e.g., FLUOstar Omega, BMG Labtech).

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2

3D Culture of Tumor Spheroids

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Cell lines were plated as 500 cells/well in 48-well plates (MatTek, 6mm, glass-bottomed), embedded in 9μL of phenol-red free matrigel matrix (Corning). Organoids were allowed to form for three weeks with media changes every 3-4 days. Live/dead imaging was performed by staining with Hoechst (5μg/mL), Calcein AM (1μM), and SYTOX Orange (0.5μM) for 1 hour prior to imaging with an Olympus IX81 inverted microscope. Relative ATP levels were measured using CellTiter Glo 3D (Promega). Fully-mature spheroids were formalin-fixed, paraffin embedded and sectioned. Sections were stained for hematoxylin and eosin (H&E) and imaged on a Zeiss Axio Scan.Z1. Quantification of hollow spheroids was done by a blind count of hollow spheroids by visual inspection from four equally sized regions of each H&E stained slide, analyzing only spheroids that were at least 50μm across.
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3

Cell Viability Quantification

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Equal numbers of viable cells were determined by trypan blue exclusion were measured by CellTiterGlo3D (Promega, G9681).
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4

Optimizing Temozolomide Dosage in 3D GBM Models

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To determine the temozolomide (TMZ) dosage with which to perform experiments, a dose‐response experiment using GBM12‐only (2.5 × 105 cells mL‐1) hydrogels was performed that had been cultured for seven days. Hydrogels were cultured with 0–600 × 10‐6m temozolomide (TMZ, Calbiochem via Millipore Sigma, Burlington, MA), and 0.47% v/v DMSO (Sigma Aldrich) was used as a vehicle control. Hydrogels were cultured for 48 hours before viability was assessed using CellTiter‐Glo 3D (Promega, Madison, WI). TMZ dosage and treatment period were informed by prior studies in the lab as well as chemotherapy studies performed in other 3D in vitro models.[13, 55] Hydrogels were equilibrated for 45 min at room temperature, and media was subsequently removed and replaced with 400 µL per hydrogel of 1:1 CellTiter‐Glo Reagent: Knockout DMEM/F12 with StemPro Neural Supplement. Hydrogels were incubated at room temperature for one hour before the CellTiter:media solution was pipetted in triplicate into white‐walled 96‐well plates (Thermo Fisher Scientific) and luminescence was measured using a Biotek Synergy HT microplate reader (Winooski, VT). Viability was additionally assessed on untreated hydrogels at the beginning of the treatment period in order to calculate GR values according to Hafner et al. (Figure S7, Supporting Information).[21]
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5

Organoid Viability Assay for Intestinal and Colon Cells

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An 8 week old, female, C57BL/6 mouse was sacrificed and small intestine crypts were harvested for organoid isolation and cultured as previously described (O'Rourke et al., 2016 (link)). Human colon organoids were cultured as previously described (Sato et al., 2011 (link)). Organoid cultures were passaged and embedded in 25 μl Growth Factor Reduced Matrigel (Corning, 356231) and plated in triplicates in a 48-well plate. Indicated treatments (small intestine: vehicle, 1 μM LGK974, 1 μM LGK974 +50% WNT3A conditioned media, 1 μM LGK974 +30 nM FLAg; colon: WNT3A conditioned media, removal of Wnt from media, 10 nM FLAg) were added to 250 μl of complete media, added to each well on day of passaging and changed every 2–3 days.
At the endpoint (small intestine: 7 days; colon: 12 days), 150 μl CellTiter-Glo3D (Promega) was added to 150 μl media in each well. Organoids were lysed on a rocking platform for 30 min at room temperature. The luminescence reading was measured in duplicates for 20 μl lysate from each well on the Envision multilabel plate reader. The average luminescence reading for each condition was normalized to the control condition to calculate viability.
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6

Evaluating Cytotoxic Effects on Cancer Cells

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For colony formation assays, 400 cells/well were seeded into 24-well plates. Cells were treated with DMSO or gemcitabine at various doses on day 1 for 24 hours. Gemcitabine was washed out on day 2, vemurafenib, dabrafenib, and methotrexate were added. Day 4, drugs added on day 2 were washed out. Cells were allowed to grow for 7 days and fixed (10% methanol + 10% acetic acid) and stained with crystal violet (0.4% in 20% ethanol) for quantitation at 595 nm. For spheroid assays, cells were plated in 96-well spheroid plates (Corning CLS4515) according to cell line-specific plating efficiencies that allowed for >500μm in diameter of spheroid after 48 hours. Cells were treated with DMSO or gemcitabine at various doses on day 2 for 24 hours. Gemcitabine was washed out on day 3, vemurafenib and dabrafenib. On day 5, growth was analyzed using Cell Titer Glo 3D (Promega).
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7

Cell and Spheroid Viability Assays

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Cell viability was estimated after addition of PrestoBlue™ reagent (Life Technologies, Carlsbad, CA, USA) for 3 h, following the supplier protocol. For spheroid viability assays, the viability was estimated after addition of CellTiter‐Glo® 3D for 1 h, following the supplier protocol (Promega, Madison, USA).
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8

Cell Viability Determination Using CellTiterGlo 3D

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Cell viability was determined using CellTiterGlo 3D (Promega) according to the manufacturer’s instructions. More detailed protocols are discussed in SI Appendix.
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9

Organoid Viability Quantification

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Single‐cell suspensions from AOs were generated as described and counted. 3 × 103 cells per replicate were plated in BME and incubated in AO medium as described. At the indicated time points, the medium was removed, and organoids were lysed in CellTiter‐Glo 3D (Promega) according to the manufacturer's instructions. Luminescence was measured using a microplate luminometer (Berthold Technologies).
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10

Organoid-Based Drug Sensitivity Screening

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Organoids were cultured in AO medium for 5 to 10 days after organoids were dissociated into single cells using TrypLE (Thermo Fisher Scientific). Dispase solution (1 mg/mL) was added to plates and incubated at 37°C for 10 minutes before cell suspension was pipetted with a 1 mL tip a few times, washed twice with cold PBS, and centrifuged at 1300 rpm for 3 minutes. Organoid pellets were resuspended in AdDF+++ medium containing 5% Matrigel, seeded on 96-well ultra-low attachment plates (Corning; 2,500 organoids/well), and treated with drugs after 1 hour (22 (link)). At indicated time points, CellTiterGlo 3D (Promega) was used to measure luminescence according to the manufacturer's protocol.
For 2D cultures, cells were seeded on 96-well plates in AdDF+++ medium (5,000 cells/well; ref. 7 (link)). After overnight incubation, AdDF+++ medium containing drugs were added to the wells. After 3 days, CellTiterGlo 3D was used to measure luminescence according to the manufacturer's protocol.
IC50 values were calculated from three biological replicates (three technical replicates per biological replicate) using GraphPad Prism version 7. In vitro response to a targeted therapy was defined as sensitive (IC50 value < 100 nmol/L) or resistant (IC50 value > 100 nmol/L; ref. 7 (link)).
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