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158 protocols using uv visible spectrophotometer

1

Enzymatic Defenses in Chickpea Leaves

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The Enzymatic (Defensive) Peroxidase activity in Chick pea leaves were determined by using method developed by (10) and absorbance was measured at 420nm by UV visible Spectrophotometer (Shimadzu). Phenylalanine ammonia lyase were determined by using method developed by (11) and absorbance was measured at 270nm by UV visible Spectrophotometer (Shimadzu). Poly phenol oxidase were determined by using method developed by (12) and absorbance was measured at 280nm by UV visible Spectrophotometer (Shimadzu).
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2

Determination of Chlorophyll and Flavonoids

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Total chlorophyll contents of the samples were determined according to the method of Whapham et al. (1993) (link). Briefly, fully expanded younger fresh leaves (1.0 g) were extracted with 90% acetone and filtered. Then absorbancies were measured with a UV/visible spectrophotometer (Shimadzu) at 645 and 663 nm. The total chlorophyll content were measured as chlorophyll a+b. 2.9. Determination of total flavonoid contents Total flavonoid contents of the samples were determined using aluminum chloride colorimetric method, as previously described (Tohidi et al., 2017) (link). Briefly, 125 µL of the extract was added to 75 µL of a 5% NaNO 2 solution, followed by incubated at room temperature for 6 min. Afterwards, 150 µL of AlCl 3 (10%) was included and incubated for 5 min at room temperature. 750 µL of NaOH (1 M) was then added. The final volume of the solution was brought to 2.5 mL with distilled water. Then it was incubated at room temperature for 15 min. Afterwards the mixture turned pink and the absorbance of the mixture was read at 510 nm using a UV/visible spectrophotometer (Shimadzu). The total flavonoid content (TFC) was calculated as mg of quercetin equivalents (QE) per gram of the extract.
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3

Quantifying Microbial Biomass via Optical Density

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The optical density of cultures was measured using a UV–visible spectrophotometer (Shimadzu Co, Tokyo, Japan). Samples of the culture (1 mL), taken at 2-h intervals, centrifuged at 8000 rpm (7168 RCF) for 5 min (Beckman Coulter, Allegra™ X-22R Centrifuge), double washed (0.96% saline buffer) and finally suspended in 1 mL of the same buffer. The absorbance of such cell suspensions was measured at 600 nm (OD600). Dilution of the samples (2–20-times) with 0.96% saline buffer was performed in case of > 0.4 absorbance values. Also, 5 mL samples of the cultures were passed through a filter paper and the cells were double-washed with 0.96% saline buffer. The cells were dried at 60 °C for 24 h in an oven and finally weighed to constant weight. According to the established regression between the dry cell weight and OD600, the biomass was expressed as g/L of dry biomass. Simultaneously, the viable cells were counted in selected cultures using serial dilution (10 to 109) and plating techniques. Serial dilutions prior to plating were performed on ice. For plating, 8-cm plates of MRS agar were inoculated by 50 µL of the 107, 108, 109 and 1010 dilutions followed by homogenously streaking. Finally, 48 h incubation of the plates was performed at 37 °C prior to enumeration of the colony-forming units.
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4

Determination of Total Phenolics in Cornelian Cherry Juice

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The total phenolics content was determined by using the Folin-Ciocalteu reagent based on colourimetric reduction [33 ]. Folin-Ciocalteau (10%, w/v,) of 1 mL is added to 0.2 mL of prepared Cornelian cherry juice, followed by the addition of 1.2 mL of aqueous Na2CO3 (7.5%, w/v). The mixture was left in the dark for 90 min. The absorbance of the blue colour solution was monitored at 760 nm on a UV visible spectrophotometer (Shimadzu, Kyoto, Japan) against a blank (distilled water). Total phenolics concentration (mg/100 mL) of the samples were analyzed in triplicates and extrapolated from a standard curve constructed by using Gallic acid as a standard. Results were expressed as mg Gallic acid equivalents (GAE)/100 mL juice. All measurements were repeated three times.
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5

Clove Oil Nanoparticle Synthesis and Characterization

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Nanoparticles of clove oil have been mixed with absolute ethanol–H2O (75 : 25) and heated for 30 min at 50°C. For each mixture, a dilution series is made to obtain different concentrations. A UV-visible spectrophotometer (Shimadzu, Japan) was used to colorimetric tests for the absorbance of each concentration. From the obtained concentration plot calibration to the absorption of nanoparticles from clove oil-PEG. After storage of 5 day, several parts of nanoparticles (0.1 g per part) were dissolved in 2 mL of absolute ethanol–H2O (75 : 25) and heated for 30 min at 50°C, to dissolve completely. The solution absorbance is set at 285.5 nm, and the values were compared with the standard curve. The efficiency of the encapsulation of clove oil is calculated by comparing these observations with the original amount of inserted clove oil. Every test is repeated 3 times.
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6

Standardized Ibuprofen Quantification

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The stock solution of ibuprofen was prepared by dissolving 20 mg drug into 100 ml phosphate buffer (pH 6.8), which was used to plot a standard curve of ibuprofen. The four different concentrations (0.1, 0.05, 0.025, and 0.0125 mg/ml) were prepared from the stock solution. UV-visible spectrophotometer (Shimadzu, Japan) was used to analyze the absorbance of these dilutions. The standard curve was prepared by plotting different concentrations of ibuprofen against absorption as shown in Figure 3.
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7

Haloarchaea Growth in NaCl Gradients

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The effect of NaCl concentration on growth of haloarchaea was studied by monitoring its growth in SG medium containing 5%, 8%, 10%, 15%, 20%, 25%, 30% & 35% (w/v) NaCl at 40 °C for 7 days. The growth was measured in terms of absorbance at 600 nm using UV-Visible Spectrophotometer (Shimadzu, Japan). The isolate RR12 (Hal. marismortui) that demonstrated growth and stable pigment production over a wide range on sodium chloride concentration (8% to 20% NaCl) was selected for further studies.
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8

Determination of Polyphenols and Antioxidant Activity in Pomegranate Juice

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Total phenolic content was determined by using the Folin-Ciocalteu reagent (Sigma, St. Louis, MO, USA) based on colorimetric reduction [32 ]. The phenolic compounds are oxidized to phenolates by the reagent at alkaline pH in a saturated solution of sodium carbonate resulting in a blue complex. About 1mL of Folin–Ciocalteau (10%, w/v,) is added to 0.2 mL of prepared pomegranate juice, followed by the addition of 1.2 mL of aqueous Na2CO3 (7.5%, w/v). The mixture was left in the dark for 90 min. The absorbance of the blue color solution was monitored at 760 nm on a UV visible spectrophotometer (Shimadzu, Kyoto, Japan), against blank (distilled water). The total phenolics content (TPC) was assessed by plotting the gallic acid calibration curve and expressed as mg of gallic acid equivalents (GAE)/100 ml juice. The antioxidant activity (AA) of pomegranate juices was evaluated applying the ABTS radical cation decolorization assay [33 (link)]. ABTS+ was prepared by reacting of ABTS with potassium persulfate. Samples were analyzed at five different dilutions, within the linearity range of the assay, as previously described by Gentile, et al. [34 (link)]. TAA was expressed as mg of Trolox equivalent (TE)/100 mL juice. All measurements were repeated three times. All measurements were repeated three times.
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9

Biodegradation of Dibenzothiophene in Water

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In 50 ml deionized water, 2.7 mmol of DBT and 200 μl dimethylformamide (DMF) were mixed. Then, 0.125 g of NR1 (bacterial strain) was added, and a sample was agitated at 37°C and 200 rpm in an incubator. The oil (n-octane) phase of the solvent was extracted using a separatory funnel after 25 h. A UV–Visible spectrophotometer (Shimadzu, Japan) was used to measure the remaining DBT in the oil phase at 325 nm (Shah et al., 2016 (link)).
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10

Measuring Microbial Cell Hydrophobicity

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The modified method of microbial adhesion of hydrocarbon (Górna et al. 2011 (link)) was used to determine the cell surface hydrophobicity. In bacterial cultures, as the carbon and energy sources were used: fructose, diesel oil, heptane, toluene, Lutensol GD 70 (in different concentrations 6, 60, 120, 240, and 360 mg L−1). Moreover, the strains grown on diesel oil and Lutensol GD 70 were also investigated. The bacterial cells from the 7-day cultures were centrifuged (8000 rpm, 5 min, 10 °C) and washed twice with PUM buffer (19.7 g L−1 K2HPO4, 7.26 g L−1 KH2PO4, 1.8 g L−1 H2NCONH2, 0.2 g L−1 MgSO4 · 7H2O) in order to remove residual surfactant and carbon sources. Then, the cells were resuspended in the PUM buffer, an optical density was fitted to ca. 1.0. The optical density was measured at 600 nm (OD600) on a Shimadzu UV–Visible Spectrophotometer. Afterwards, 0.5 mL of heptane was added to 5 mL of cell suspension and vortexed for 2 min. After 60 min, the OD600 of the aqueous phase was measured. The microbial adhesion to hydrocarbons was calculated as follows: H=1A1/A0×100%
H—hydrophobicity [%]; A0—OD600 of initial aqueous phase [−]; A1—OD600 of aqueous phase after mixing with hexadecane [−].
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