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6 protocols using mouse monoclonal anti β actin clone ac 15

1

Antibody Production and Characterization

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Mouse monoclonal anti-CHC17 antibodies X22 (Brodsky, 1985 (link)), TD.1 (Näthke et al., 1992 (link)) and affinity-purified rabbit polyclonal antibody specific for CHC22 and not CHC17 (Vassilopoulos et al., 2009 (link)) were produced in the Brodsky laboratory. Commercial sources of antibodies were as follows: mouse monoclonal anti-β-actin (clone AC-15, Sigma), mouse monoclonal anti-HA (clone 16B12, Covance), rabbit polyclonal anti-CHC22 (Proteintech). Secondary antibodies coupled to HRP were from ThermoFisher, the secondary antibody coupled to Brilliant Violet 421 was from BioLegend. The HA-GLUT4-mCherry was generated by replacing the GFP from the HA-GLUT4-GFP construct (gift from Dr Tim McGraw; Lampson et al., 2000 (link)) with mCherry using KpnI and EcoRI. The generation of the CHC22 variant expressing a valine at position 1316 (CHC22V) was previously described (Esk et al., 2010 (link)). The CHC22 variant expressing a methionine at position 1316 (CHC22M) was generated from CHC22V by quick-change mutagenesis (New England Biotechnologies, USA) following manufacturer’s instructions.
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2

Western Blot Analysis of Protein Targets

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Western blots were performed as described19 (link), 77 (link) using the following antibodies: mouse monoclonal anti-β-actin (clone AC-15, Sigma-Aldrich, St. Louis, MO, USA), rabbit polyclonal anti-CASP3 (Cell Signaling, Danvers, MA, USA), mouse monoclonal anti-GAPDH (clone 6C5; Merck Millipore, Darmstadt, Germany), mouse monoclonal anti-HDAC1 (clone 10E2; Abcam, Cambridge, UK), mouse monoclonal anti-HDAC2 (clone 3F3; Abcam), rabbit polyclonal anti-HDAC3 (clone H-99; Santa Cruz Biotechnology, Dallas, TX, USA), rabbit polyclonal anti-HDAC8 (Abcam), mouse monoclonal anti-MYC tag (GeneTex, Irvine, CA, USA), mouse monoclonal anti-PARP (Cell Signaling), mouse monoclonal anti-phospho H3 (Ser10) (Cell Signaling), rabbit monoclonal anti-histone H3 (Cell Signaling) and rabbit polyclonal anti-RACGAP1 (Santa Cruz Biotechnology). Band density was analyzed using ImageJ 1.47p software (Wayne Rasband, National Institute of Health, Bethesda, MD, USA) on western blots, and results were normalized to the respective loading controls.
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3

Protein Analysis of PDT-Treated HeLa Cells

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For protein analysis by western blot techniques, samples from HeLa controls, ZnPc-PDT, TMPyP-PDT, and ZnPc+TMPyP-PDT-treated cell cultures were processed 6 h after the corresponding treatment. Whole protein content was extracted by lysis using RIPA buffer (50 ml of distilled water with 50 mM Tris-HCl at pH 8; 150 mM NaCl; 1% (v/v) Igepal CA630 (all from Sigma-Aldrich) and 0.1% (v/v) SDS; complemented with a tablet of complete EDTA-free protease inhibitors (Roche)). Protein concentration was determined using a BCA assay kit (Pierce, Rockford, IL, USA), and samples were loaded and separated on 15% SDS-PAGE and transferred to a nitrocellulose membrane using a Mini-Protean 3 equipment, according to the manufacturer's instructions (Bio-Rad, Hercules, CA, USA). Chemoluminescent detection of proteins was performed with a mouse monoclonal anti-β-actin (clone AC-15; Sigma-Aldrich) antibody, and a mouse monoclonal anti-PARP (clone C-2-10; Sigma-Aldrich) antibody, using overnight incubation at 4 °C. Secondary antibody was sheep anti-mouse IgG conjugated to horseradish peroxidase (Amersham Biosciences, Buckinghamshire, UK). Bands were developed on a Curix CP-G Plus paper (AGFA, Barcelona, Spain) with Western Blotting Luminol Reagent (Roche).
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4

Antibody Production and Purification

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Rabbit anti-DMT1 designed against the fourth extracellular loop of mouse DMT1 was a generous gift from Dr Michael Garrick (University at Buffalo, New York)33 (link). The production and affinity purification of a rabbit polyclonal against recombinant Ndfip1, Nedd4-2 and Ndfip2 have been described previously14 15 (link)34 (link). Commercial antibodies and reagents were purchased from the following suppliers: Donkey anti-rabbit AlexaFluor-488 and calcein-AM (Life Technologies), rabbit polyclonals anti-ferritin (light chain) and anti-ferroportin (Abcam), mouse monoclonal anti-β-actin (clone AC-15; Sigma-Aldrich), donkey anti-rabbit HRP and ECL™ Plex goat anti-mouse Cy5 (GE Healthcare). ECL prime (GE Healthcare) was used as the detection reagent for immunoblotting.
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5

Investigating Doxorubicin Cytotoxicity and PD-L1 Expression

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Dulbecco’s modified Eagle’s medium (DMEM) and heat-inactivated fetal bovine serum (FBS) were obtained from Fisher Scientific (Chicago, IL, USA). Penicillin and streptomycin were obtained from HyClone (Logan, UT, USA). Doxorubicin was obtained from Sigma (St. Louis, MO, USA). 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyltetrazolium bromide (MTT) was purchased from Thermo Fisher Scientific (Asheville, NC, USA). Rabbit monoclonal antibodies for PD-L1 (clone E1L3N®) were obtained from Cell Signaling Technology (Danvers, MA, USA), and monoclonal mouse anti-β-actin (clone AC-15) from Sigma (St. Louis, MO, USA). Secondary goat anti-rabbit immunoglobin G (IgG)-HRP (W401B) and goat anti-mouse IgG-HRP (W402B) monoclonal antibodies were purchased from Promega (Madison, WI, USA). Enhanced chemiluminescence reagents were obtained from Thermo Fisher Scientific (Asheville, NC, USA).
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6

Osteosarcoma Cell Line Characterization

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The SJSA-1 osteosarcoma cell line was purchased from the American Type Culture Collection (ATCC). Dulbecco's modified Eagle's medium (DMEM) and heat-inactivated fetal bovine serum (FBS) were obtained from Cellgro, whereas penicillin and streptomycin were obtained from HyClone. Doxorubicin and 3-(4,5-dimethyl-2-thiazolyl)-2,5-diphenyltetrazolium bromide (MTT) were purchased from Sigma-Aldrich. Rabbit monoclonal antibodies for PD-L1 (clone E1L3N) were obtained from Cell Signaling Technology, and monoclonal mouse anti–β-actin (clone AC-15) was from Sigma-Aldrich. Secondary goat anti-rabbit immunoglobin G (IgG)-HRP (W401B) and goat anti-mouse IgG-HRP (W402B) monoclonal antibodies were purchased from Promega. Enhanced chemiluminescence reagents were obtained from Thermo Fisher Scientific (32106).
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