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6 protocols using click it o glcnac enzymatic labeling system

1

Chemoenzymatic Labeling and Biotinylation of Proteins

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Chemoenzymatic labeling and biotinylation of proteins in total cell lysates were carried out as described previously (14 (link), 47 (link)). In brief, proteins (200 μg) were labeled utilizing the Click-iT O-GlcNAc Enzymatic Labeling System (Invitrogen). The permissive mutant β-1,4-galactosyltransferase (GalT) is responsible for the transfer of azido-modified galactose (GalNAz) from UDP-GalNAz to O-GlcNAc residues on target proteins. Modified proteins were detected utilizing the Click-iT Biotin Protein Analysis Detection Kit protocol (Invitrogen). Biotinylated proteins were resolubilized in binding buffer (0.1 M phosphate, 0.15 M NaCl, 0.1% SDS, 1% NP-40, pH 7.2). Appropriate amount of streptavidin resin (Thermo) was added to incubate with the mixture overnight at 4 °C. The streptavidin-bound complex was washed with binding buffer. Following the removal of supernatants, pellets were eluted by boiling with loading buffer (2% SDS, 10% glycerol, 2.5% 2-mercaptoethanol, 62.5 mM Tris–HCl, pH 6.8) and analyzed by WB.
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2

Enzymatic Labeling of O-GlcNAcylated Proteins

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Click-it O-GlcNAc Enzymatic Labeling System (Invitrogen C33368) is a method for modification in vitro of O-GlcNAcylated proteins. Proteins were enzymatically labeled by the permissive mutant B-1,4 galactosyltransferase (Gal T1 Y289L), which transfers azido-modified galactose (GalNAz) from UDP-GalNAz to O-GlcNAc residues in the target proteins. A protein extract with no enzymatic treatment was used as a negative control, and α-crystallin, a protein with a low O-GlcNAcylation level (2–10%) was used as a positive control. Click-it O-GlcNAc enzymatic labeling was performed following the manufacturer's protocols. Labeled proteins were detected by Western blot with the Click-it Biotin Protein Analysis Detection Kit (Invitrogen C33372).
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3

In vitro O-GlcNAcylation of TAB3

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In vitro O-GlcNAcylation of TAB3 was detected as previously described [8 (link)]. The TAB3 (1 mM) was added into 20 μl reaction buffer (50 mMTris-HCl [pH = 7.5], 1 mM DTT, 12.5 mM MgCl2) which contain 50 mM OGT and 1 mM UDP-GlcNAc. The reaction mixtures were incubated for 90 min at 37°C, stopped by adding loading buffer, resolved on Western blot with appropriate antibodies. To enzymatic label TAB3 at O-GlcNAc site, O-GlcNAcylated GST-TAB3 bound beads and was labeled using Click-iT O-GlcNAc enzymatic labeling system (Invitrogen, Carlsbad, USA) and detected by Click-iT biotin protein analysis detection kit (Invitrogen, Carlsbad, USA) following manufacturer's recommendation. β-elimination was performed overnight at 4°C using the GlycoProfile β-elimination kit (Sigma, St. Louis, USA) according to the manufacturer's instructions.
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4

Evaluating EZH2 O-GlcNAcylation in N2a Cells

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The plasmid pCAGGS-EZH2-S73/S75/S725A-flag was co-transfected with pcDNA3.1, pcDNA-EDAL, or pcDNA-revEDAL in N2a cells and treated with 5 mM NH4Cl for 48 h. Then, the cells were lysed, and EZH2-S73/S75/S725A-flag was pulled down by anti-flag beads (MBL, M185-10). The extracted protein was labeled with Click-iT™ O-GlcNAc Enzymatic Labeling System (Invitrogen, C33368) following the manufacturer’s protocol. Then the O-GlcNAcylation level of the labeled EZH2-S73/S75-S725A-flag was analyzed by Click-iT™ Protein Analysis Detection Kits (Invitrogen, C33370).
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5

Enrichment of O-GlcNAcylated Proteins

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Labelling of O-GlcNAc-bearing proteins by GalNAz and biotin alkyne was done using the Click-it O-GlcNAc enzymatic labeling system and the Click-it Glycoprotein detection kit (Biotin alkyne) according to the manufacturer's instructions (Fischer Scientific) (18). Bovine α-crystallin was used as a positive control. After labeling, proteins were precipitated using the methanol/chloroform protocol and resuspended in 50 μL of Tris/HCl pH 8.0 containing 0.1% (w/v) SDS. 700 μL of enrichment buffer (1% (v/v) Triton X-100 and 0.1% (w/v) SDS in PBS) was added to the sample before incubating with 50 μL of avidin-coupled beads (1 h, 4°C). Avidin-bound proteins were collected, washed three times with enrichment buffer, resuspended in Laemmli buffer and boiled. Controls of labeling and enrichment followed the same procedure except that the chemical labeling with UDP-GalNAz was omitted.
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6

Comprehensive Analysis of O-GlcNAc Regulation

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Synthetic androgen, R1881, and dihydrotestosterone were obtained from Sigma-Aldrich. OGT inhibitors, OSMI2 and OSMI3 were kindly provided by Professor Suzanne Walker (Harvard Medical School, Boston, MA). Formaldehyde 16% (F017/3) was purchased from TAAB laboratory. iDeal ChIP-seq Kit for Transcription Factors (C01010170) was obtained from Diagenode. B32B3 (SML1419) and cycloheximide (C4859) were purchased from Sigma-Aldrich. Antibody details are provided in Supplementary Table S1. Lipofectamine RNAiMAX Transfection Reagent (13778075), NE-PER nuclear and cytoplasmic extraction reagents (78835), Click-IT O-GlcNAc Enzymatic Labeling System (C33368), Click-IT Biotin Protein Analysis Detection Kit (33372), and High-Capacity Streptavidin Agarose Resin (20357) were obtained from Thermo Fisher Scientific. Protein A sepharose beads (ab193256) and protein G sepharose beads (ab193259) were from Abcam.
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