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101 protocols using hsp70

1

Antibody Characterization for Protein Analysis

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Antibodies used in this study consisted of: PKA-Cα (Santa Cruz Biotechnology, cat. no. sc-28315), GAPDH (Cell Signaling Technologies; cat. no. 5174), Drp1 (BD Biosciences, cat no. 611112), HSP70 (Santa Cruz Biotechnology, cat. no. sc-32239), and Tomm20 (Novus Biologicals, cat. No. NBP2-67501).
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2

Western Blot Analysis of Stress Proteins

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As described in our previous study[8 (link)], the whole cell lysate protein was mixed with SDS-PAGE sample buffer and boiled for five minutes. Prepared protein samples were separated by SDS-PAGE electrophoresis and electrotransferred onto polyvinylidene fluoride membranes. After blocking, the membranes were blotted with primary antibodies against PDX1, HSP27, HSP60, and HSP70 (Santa Cruz Biotechnology). The membranes were then incubated with horseradish peroxidase (HRP)-conjugated secondary antibodies and visualized using an enhanced chemiluminescence system (Amersham, Piscataway, NJ, United States).
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3

Western Blot Analysis of Protein Interactions

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Cells were lysed in RIPA lysis buffer (50 mM Tris–HCl, 150 mM NaCl, 5 mM EDTA, 0.5% Nonidet P-40 and a protease and phosphatase inhibitor cocktail (Calbiochem)). Proteins were separated by sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to 0.45 μM PVDF membranes (Millipore). The immunoblots were processed according to standard procedures using primary antibodies directed to p300 (BD, 554215), CBP (CST, 4772), GAPDH (CST, 2118), HA (CST, 3724), Flag (CST, 14793), Hsp70 (Santa Cruz, sc-24), p53 (Santa Cruz, sc-6243), c-Myc (Santa Cruz, sc-40), hSSB1 (Bethyl, A301–938A), NBS1 (Bethyl, A300–187), tubulin (Bioworld, BS1482M) and ac-K (abnova, PAB10348).
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4

Protein Extraction and Western Blot Analysis

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Total protein was extracted from cells using radioimmunoprecipitation assay (RIPA) buffer (Thermo Fisher, Houston, TX, USA) containing 50 mM Tris–HCl, 150 mM NaCl, 0.1% sodium dodecyl sulfate (SDS), 0.5% sodium deoxycholate, and 1% Triton X, plus Halt protease and phosphatase inhibitor (Thermo Fisher). Protein was quantified using Pierce BCA protein assay (Thermo Scientific) and read on a BioTek microplate reader at 570 nm. Protein was denatured by heating at 95 °C for 5 min and separated on a gradient SDS polyacrylamide gel electrophoresis gel (Thermo Fisher). The proteins were transferred onto a nitrocellulose membrane (LI-COR #926-31092, Lincoln, NE, USA), blocked using Odyssey blocking buffer (LI-COR #927-40000), incubated overnight with antibodies as follows, and visualized using a LI-COR Odyssey fluorescence scanner. The primary antibodies were Nrf2 (SC-722) 1:200 rabbit polyclonal (Santa Cruz Biotechnologies), GAPDH (MAB374) 1:1,000 mouse monoclonal (Chemicon Int., Temecula, CA, USA), HSP70 (SC 33575) 1:1,000 rabbit polyclonal (Santa Cruz Biotechnologies), tumor necrosis factor receptor–associated factor 6 (TRAF6; 04-451) 1:1,000 rabbit monoclonal (Chemicon), and HMOX-1 (SC10789) 1:100 rabbit polyclonal (Santa Cruz Biotechnologies), as shown in Table 2.
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5

Immunophenotyping of Exosomes by Antibodies

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Annexin A2, DC-SIGN, ICAM-1, Integrin β1, Integrin β3, Integrin β5, HRS, STAM1, VPS4, p-p38, p-Paxillin, p-Stat1, p-Stat3, p-Stat5, Ubiquitin, Vimentin, and β-Actin antibodies were obtained from Cell Signaling Technology (Danvers, MA). CD63, CD9, CD81, HSP70, Integrin αM, Integrin α3, Integrin α5, Annexin A6, TSG101, Alix, and GAPDH antibodies were obtained from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). LFA-1 antibody was obtained from BD Biosciences; MHC II and Fibronectin antibodies were obtained from Abcam (Cambridge, MA), and Tubulin antibody was obtained from Sigma-Aldrich (St. Louis, MO). HIV-1 p24 gag and HIV-1 gp120 antibodies were obtained from ABL (Rockville, MD) while the HIV-1 Reverse Transcriptase antibody was obtained from Invitrogen (Carlsbad, CA). APC anti-human CD63 antibody and APC Mouse IgG1, κ Isotype Ctrl (FC) were obtained from Biolegend (San Diego, CA). Exosome-depleted FBS was obtained from System Biosciences (Palo Alto, CA). β-lactose was obtained from Sigma-Aldrich (St. Louis, MO).
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6

Quantitative Analysis of Protein Expression

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HSC70 (Santa Cruz Biotech, sc-7298), HSP70 (Santa Cruz Biotech, sc-66048), mouse IgG (Santa Cruz Biotech, sc-2025), Alexa Fluor 647-conjugated donkey anti-mouse IgG (H+L) (Life Technologies, A31571), Alexa Fluor 594-conjugated donkey anti-rabbit IgG (H+L) (Jackson ImmunoResearch, 711-585-152), and tubulin (abcam, ab6160).
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7

Ultrastructural and Molecular Analysis of ASCs-Derived Exosomes

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Exosomes were fixed in 2% glutaraldehyde in DNase/RNase-Free Distilled Water (for 10 min on 150 mesh formvar and carbon-coated copper grids (Società Italiana Chinici, Rome, Italy), and dried under a hood. The images were acquired with a transmission electron microscopy (TEM) using a Morgagni 268D electron microscope (Philips, Andover, MA, United States) operating at 80 kV and equipped with a Megaview II camera (Olympus corporation, Tokyo, Japan) for digital image acquisition.
To perform Western blot of ASCs-exosomes, the proteins were denatured, separated on 4-12% polyacrylamide gels, transferred onto a nitrocellulose membrane and probed with antibodies against Alix (1:50, Santa Cruz Biotechnology, Q-19:sc-49268), heat shock protein 70 (HSP70, 1:100 Santa Cruz Biotechnology, sc-1060), and tetraspanine CD81 (1:100 Santa Cruz Biotechnology, sc-9158). The appropriate HRP-conjugated secondary antibodies against primary antibody (all secondary antibodies from Dako Agilent) were used. ASCs lysates were used as positive control. The blots were then incubated with a chemiluminescent HRP substrate and detected with G:BOX F3 GeneSys (Syngene, United Kingdom).
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8

Immunohistochemical Analysis of Cellular Stress Markers

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After de-paraffinization of sections, the slides were autoclaved in 0.1M sodium citrate pH 6 for antigen retrieval step (30 (link)). The slides were allowed to cool and washed with PBS twice times. Slides were incubated with 5% normal serum depending upon the source of secondary antibody used. The slides were incubated with primary antibodies at 4°C overnight (HSP70, 8-oxoguanine p-JNK, COX2, GFAP) from Santa Cruz Biotechnology at 1:100 dilution. Next morning, after washing with PBS, fluorescent labeled secondary antibodies (Santa Cruz Biotechnology) as 1:50 dilution were used for signal amplification in dark chamber, followed by mounted with UltraCruz mounting medium (Santa Cruz Biotechnology). The slides were pictured with confocal scanning microscopes (Flouview FV 1000, Olympus, Japan) and fluorescence intensity was quantitatively analyzed by ImageJ and expressed as the relative integrated density of the samples relative to the sham.
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9

Protein Quantification and Western Blot Analysis

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The total protein was isolated by lysing cells with RIPA buffer, and the protein concentrations were determined using a BCA kit (Pierce™ BCA Protein Assay Kit (Thermo Scientific, Rockford, IL, USA). Protein samples (40 μg) were electrophoresed on 10% sodium dodecyl sulfate (SDS) polyacrylamide gels and transferred to the Immobilon-p Transfer membrane (Millipore, Billerica, Massachusetts, USA). Membranes were blocked with 3% BSA in PBS for 1 hour at room temperature. Membranes were probed with respective specific primary antibodies [αSMA (Thermofisher; 1:500) and HSP70 (Santacruz; 1:250)] overnight at 4˚C. Membranes were washed with tween 20 tris-buffered saline (TTBS) buffer three times and probed with respective secondary antibodies. Following washing with TTBS buffer membranes were visualized using Luminata Forte Western HRP Substrate Kit (Millipore, Billerica, MA). We utilized NIH Image J Software for quantification of the intensity of the bands of our protein of interest and their respective loading control. We also normalized the bands to the Control cells used in the study.
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10

Western Blot Protein Analysis

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Western blotting was performed as described previously.4 Samples of equivalent total protein (20 μg) were loaded. Primary antibodies against CD63, CD81, HSP70 (Santa Cruz Biotechnology, Santa Cruz, CA, USA), β‐Actin, ZIP4, Adiponectin, MMP9 and MMP12 (ProteinTech Group, Rosemont, IL, USA) were used.
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