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9 protocols using 35 μm nylon mesh

1

Fluorescence Analysis of Protein-Cell Interactions

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Cells were diluted to 106 cells/ml and passed through a 35 μm nylon mesh (BD Biosciences) to obtain single-cell suspensions. Fluorescence analysis was performed on a FACSCalibur flow cytometer with a 15 mW, 488 nm air-cooled argon ion laser and analyzed by the CELLQUEST software (version 3.3; Becton–Dickinson, U.S.A.). Interaction of Alexa 488-conjugated proteins with CHO-K1 and pgsD-677 cell surfaces was determined as the percentage of cells emitting a fluorescent signal. The boundary between cells that stained positive and negative for Alexa 488 was determined according to the fluorescence distribution of positively stained versus unstained samples. A minimum of 20,000 events per sample was acquired using the CELLQUEST software and analyzed by FlowJo (version 6.4.1; Tree Star, San Carlos, CA).
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2

Cell Cycle Analysis by Flow Cytometry

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Cells were treated with DMSO or 6OTD (100 nM) 1 day after seeding. These cells were incubated for 5 days and washed with phosphate-buffered saline (PBS) followed by a centrifugation at 4 °C for 5 min at 210 × g. Cell pellets were resuspended in 900 μL of PBS, and cells were subsequently fixed in 2.1 mL of ice-cold ethanol. After incubation for 30 min at 4 °C followed by a centrifugation at 4 °C for 5 min at 1,920 × g, cell pellets were washed with PBS. Next, cell pellets were resuspended in 400 μL of 2.0 mg/mL RNase A (Sigma-Aldrich), followed by 30 min incubation at 37 °C and washing with PBS. The cell pellets were resuspended in 1.0 mL of 50 μg/mL PI (Sigma-Aldrich) and incubated for 15 min in the dark at room temperature. After filtration through 35-μm nylon mesh (BD), these cells were analyzed using a FACS Calibur (BD).
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3

Single-Cell Dissociation and FACS Analysis

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Cells were dissociated with 0.25% trypsin/1 mM EDTA solution and passed through 35-μm nylon mesh (BD Biosciences) to obtain single-cell suspensions. Cells were analyzed on a FACSAria II instrument (BD Biosciences). Cutoffs were set using uninduced MEFs. Data were analyzed by FlowJo software (FlowJo, LLC).
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4

Microglia and Myeloid Infiltrate Isolation

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The cell suspension was Fc receptor blocked with anti‐mouse CD16/CD32 (eBioscience) for 10 min on ice. Subsequently, the cells were incubated with CD11b PE (eBioscience), CD45 FITC (eBioscience), Ly‐6C APC (Biolegend) and CD3 PE/Cy7 (Biolegend) for 30 min. The cell suspension was washed with Phenol Red deficient isolation medium, centrifuged (230 g, 4 °C, acc: 9, brake: 9, 3 min) and after passing through a 35 μm nylon mesh (BD Biosciences) collected in round bottom tubes. Fluorescence activated cell sorting (FACS) was performed on a BD Biosciences FACSAria II cell sorter. After gating for viable cells based on 4′,6‐diamidino‐2‐phenylindole (DAPI; 0.5 μM; Sigma‐Aldrich), microglia were defined as CD11bpos CD45int Ly‐6Cneg and myeloid Ly‐6Cpos infiltrates as CD11bpos CD45high Ly‐6Cpos. The cells were collected in Phenol Red deficient isolation medium and used for further application. FACS plot analysis was performed with Tree Star FlowJo software v10.
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5

Flow Cytometric Characterization of MC and MDM

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Flow cytometric measurements were made on freshly isolated MC or MDM obtained by differentiation for 7 days in the presence of M-CSF. Prior to flow cytometry, adherent MDM were washed twice with Hank’s balanced salt solution (HBSS) and released from the culture flask by treating with Accutase (Cell Technologies) for 30 min at 37°C. MC and MDM were resuspended at a concentration of 106 cells/mL in 1 × HBSS (pH 7.2), 5 mM EDTA and 0.5% BSA and passed through a 35 μm nylon mesh (BD Biosciences) before injection on a FACSCalibur flow cytometer (Becton Dickinson). For each cell type, 20,000 events were recorded for analysis. Dot plots were created using forward scatter (FSC-H) and side scatter (SSC-H) measurements to determine the size and granularity differences. All data were analyzed using Cell Quest software.
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6

Fluorescence-Activated Cell Sorting of hNSCs

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48-hours after transfection, hNSCs expressing each of the above shRNA constructs were dissociated by Accutase (Life Science Technology), gently resuspended in KnockOut DMEM/F-12 medium, and filtered through a 35μm nylon mesh (BD Biosciences). All samples were kept on ice before sorting. Cells were sorted at a rate of ~3,000 events per second on a fluorescence-activated cell sorter FACSAria II (BD Biosciences). Digital data were collected using FACS Diva software (BD Biosciences). Before sorting, the nozzle, sheath, and sample lines were sterilized with 70% ethanol and DEPC-treated water. Between running two samples, the system was cleaned with DEPC-treated water. Both 80μm and 100μm nozzles (BD Biosciences) were used for hNSC cell sorting. Forward-angle and side-angle light scatter were used to set the gate for live cells. GFP fluorescence intensity was detected using a blue laser operating at 488 nm and a 530/30nm bandpass filter for FITC/GFP. hNSCs not expressing GFP were used to determine the threshold parameters for selecting cell populations with GFP signals. Sorted cells were collected in KnockOut DMEM/F-12 medium, spun down, resuspended in 700μL QIAzol (Qiagen) and stored at −80°C for downstream analysis.
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7

Fluorescence-Activated Cell Sorting of hNSCs

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Forty-eight hours after transfection, hNSCs expressing each of the above shRNA constructs were dissociated by Accutase (Life Science Technology), gently resuspended in KnockOut DMEM/F-12 medium, and filtered through a 35-μm nylon mesh (BD Biosciences). All samples were kept on ice before sorting. Cells were sorted at a rate of ∼3,000 events per second on a fluorescence-activated cell sorter FACSAria II (BD Biosciences). Digital data were collected using FACS Diva software (BD Biosciences). Before sorting, the nozzle, sheath and sample lines were sterilized with 70% ethanol and Diethylpyrocarbonate (DEPC)-treated water. Between running two samples, the system was cleaned with DEPC-treated water. Both 80 μm and 100 μm nozzles (BD Biosciences) were used for hNSC cell sorting. Forward-angle and side-angle light scatter were used to set the gate for live cells. Green fluorescent protein (GFP) fluorescence intensity was detected using a blue laser operating at 488 nm and a 530/30 nm band-pass filter for fluorescein isothiocyanate/GFP. hNSCs not expressing GFP were used to determine the threshold parameters for selecting cell populations with GFP signals. Sorted cells were collected in KnockOut DMEM/F-12 medium, spun down, resuspended in 700 μl QIAzol (Qiagen) and stored at −80 °C for downstream analysis.
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8

Harvesting and Culturing Human Olfactory Mucosa

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The written consents were obtained from patients before experiment. The procedures of human tissue harvesting and handling were approved by the Ethics Committee of Eye, Ear, Nose & Throat Hospital, Fudan University (Permit Number: 2019081). Human olfactory mucosae were dissected from patients with olfactory neuroblastoma. When tumors were resected, connected olfactory mucosae were isolated from tumor tissues and kept in iced PBS. Blood cells were removed by incubation with Red Blood Cell Lysis Solution (Miltenyi, #130-094-183). Tissues were minced into small pieces and digested with 0.25% Trypsin-EDTA and 50 μg/mL DNase I. Cell pellets were collected in growth medium that was used in murine OE colony culture without addition of Matrigel and then filtered with 35-μm nylon mesh (BD Falcon). Cell suspension was resuspended in growth medium supplemented with 100 μg/mL PrimocinTM (InvivoGen, #ant-pm-1), 2 μM 616452, 500 nM A83-01 and/or 10 μM SB431542. Approximately 10000 single cells were seeded per well in low-attached 24-well plate. Colonies were visible on Day 7 and then were passaged every 10 days or based on colony growth status.
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9

Cell Cycle Analysis by Flow Cytometry

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Cells were incubated in 1 μg ml−1 doxycycline for 24 hours. 5 mM EDTA, 20 μg ml−1 Hoechst-33342 (Sigma-Aldrich), and 10 μM Verapimil (Tocris; Spirochrome) were added directly to media for 30 minutes to 1 hour to detach cells from the plate and stain them. Cells were collected and filtered through 35 μm nylon mesh (Falcon). Hoechst, GFP, and tdTomato signals were measured on an LSRFortessa (BD Biosciences) flow cytometer. Results were analyzed with FlowJo software. The fraction of cells in each cell cycle phase was determined in FlowJo with a Watson (Pragmatic) model using the Cell Cycle tool. The DNA content of at least 5,000 cells was analyzed for each condition for each experiment.
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