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24 protocols using ls004188

1

Isolation of Nodose Ganglia Neurons

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Target-ScSeq was developed by Y.L. and M.A.K. and will be described in more detail elsewhere. Briefly, thirty-four 8–12 week old C57BL/6JN mice (18 males and 16 virgin females) were used for the target-scSeq preparation. 7–14 days following WGA555 visceral organ injection, mice were anesthetized under isoflurane and then transcardially perfused with HBSS containing 10 U/mL Heparin. Nodose ganglia were rapidly dissected out within ice-cold HBSS, and chopped into 2–3 pieces, and digested in papain solution (Worthington, LS003119) 10 min at 37°C, followed by collagenase/dispase solution (Worthington, LS004188 and LS02109) for 30 min at 37°C. Tissue was centrifuged at 400 g for 4 min, resuspended in L15 medium (Gibco, 11415), then triturated with a P1000 pipette. The dissociated cell suspension was loaded on top of a Percoll/L15 solution (1:4) (Sigma, P1644–25ML) and centrifuged for 9 min at 400 g. The cell pellet was washed with L15 medium, resuspended in L15 medium, and then kept on ice until use.
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2

Isolation and Characterization of Murine Splenic Immune Cells

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Female Cnp-Mek1DD, Cnp-DR, or Plp-DR and control littermate mice were
euthanized by CO2 inhalation at 8-13 weeks of age. Spleens
were removed and immediately placed in 2 mL DMEM on ice, and
dissociated as described previously with modifications (Pachynski et al.,
2015
). Spleens were chopped and 1 mL of digestion medium
in HBSS added (0.04 mg/mL collagenase I, LS004214, Worthington
Biochemical; 1.67 mg/mL collagenase IV, LS004188, Worthington
Biochemical; 30 mg/mL DNAse I, D4527-40KU, Sigma) for 25 min.
incubation at 37°C, then 5 mL of DMEM were added and suspension
filtered through a 70 µm filter. Cells were centrifuged at 450 g for
6 min., then erythrocytes were lysed using 8.29 g/L NH4Cl,
1 g/L KHCO3, and 37.2 mg/L EDTA for 4 min. After adding
12 mL of DMEM, suspensions were filtered through a 70 µm filter,
washed with 10 mL DMEM, and centrifuged at 450 g for 6 min. Cells were
resuspended in 20 mL of HBSS, centrifuged at 450 g for 5 min., then
resuspended in 1 mL HBSS for cell counting with trypan blue. After
cell counting with a 1:4 dilution, cells were centrifuged at 450 g for
5 min. and resuspended at 1 x 106 cells/50 uL of FACS
buffer (2% goat serum, G9023, Sigma; 1% BSA, A6003, Sigma; in HBSS).
Only female mice were used for all immune cell experiments in order to
match EAE experiments.
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3

Isolation and Characterization of Primary Mouse Dermal Lymphatic Endothelial Cells

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Primary mouse dermal LECs derived from C57BL/6 embryos were obtained and maintained in complete mouse endothelial cell media with supplements (C57-6064L & M1168, Cell Biologics). All the in vitro cell culture experiments were performed within passage 5. For Dot1l inactivation, LECs were grown in the LEC culture media containing 2 µM EPZ5676 (reconstituted in DMSO, A12735, Adooq) for 7 days. The EPZ5676-treated LECs were subjected to ChIP-Seq analysis. Isolation of LECs from embryonic skin was described in a previous study65 (link). Briefly, E15.5 embryonic skin was removed and enzymatically dissociated with media containing type II and IV collagenase, and DNaseI (LS004176, LS004188, and LS006344, respectively; Worthington Biochemical Corp.) for 20 min at 37 °C. After filtration through a 40-µm cell strainer, dissociated cells were incubated in both F4/80 and CD45 antibodies (13-4801 and 13-0451, respectively; eBioscience) for 1 h at RT to deplete macrophage and collected using goat anti-rat IgG-coated microbeads (130-048-101, Miltenyi Biotec). The F4/80(–)/CD45(–) cells were incubated with Lyve1 antibody (13-0443, eBioscience) and secondary antibodies. The Lyve1(+) LECs were collected and analyzed by RNA-Seq and qRT-PCR analyses.
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4

Isolation and Purification of Embryonic and Neonatal Mouse Epidermal Cells

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For E16.5 sorting, total dorsal skin was mined into small pieces and incubated with 0.1% collagenase (Worthington, LS004188) for 30 min at 37 °C. After incubation, PBS was used to dilute the collagenase, then pipet to dissociate. Tissues were pelleted by centrifuge and then subjected to fresh Trypsin digestion for 5 min at 37 °C. PBS supplemented with 5% chelated FBS was used to neutralize Trypsin and cells were filtered through a 40-μm cell strainer. DAPI-positive dead cells were excluded and epithelial cells were enriched by selecting Krt14-H2BGFP+ cells. Flow cytometry was performed on the MoFlo XDP machine (Beckman Coulter).
For P0.5 newborn epidermal cell isolation, dorsal skin was first incubated with 2.5 U/mL Dispase to separate the epidermis from the underlying dermis. Then epidermis was floated on Trypsin, incubating for 5 min at 37 °C. Single cell suspension was generated by pipetting and filtering through a 40-μm cell strainer and used for downstream experiments.
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5

Isolation and Culture of Primary Synovial Fibroblasts

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Primary synovial fibroblasts (SFs) were isolated from noninjected naïve paws or from primed paws injected twice with MSU crystals as described [21 (link)]. After the dissection, skin, tendons, and muscle were removed from paws. SFs cell suspensions were prepared by digesting the paws in 2 mg/mL collagenase type IV (Worthington Biochemicals, LS004188, Lakewood, CA, USA) solution in DMEM for 1 h at 37 °C. The cell suspension was then filtered, and the cells collected by centrifugation. In order to obtain higher yield, primary cells from 2 paws were combined and then kept in culture in Dulbecco’s modified eagle medium (Gibco, Carlsbad, CA, USA) containing 10% heat-inactivated fetal calf serum and 1% each of penicillin, streptomycin, and fungicide (Amphotericin B, Sigma Aldrich, St. Louis, MO, USA). After two passages, cultured cells were detached using Corning Cell stripper™ (Corning 25-056, Corning, NY, USA) and stained with Sytox Green (Thermofisher S7020, Waltham, USA), BV421-coupled anti-CD31, and APC-coupled anti-CD45 antibodies. Cells were sorted on a FACS Aria machine, and CD45- CD31- negative cells were recultured. SFs between passages 4 and 8 were used for the experiments.
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6

Tissue Dissociation and Cell Isolation

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Tissue was dissociated using the following steps. Fat layers were removed, washed, and opened longitudinally. Tissues were then minced and dissociated in a cocktail solution of 12 mg collagenase IV (LS004188; Worthington), 180 U DNase (D5025; Sigma) and 1.2 mg hyaluronidase (H3506; Sigma) in 20 ml complete RPMI-1640 media with constant stirring for 25 min at 37 °C. Single cell suspensions were then filtered, and supernatants were washed in PBS-2% FBS. Tissues were digested twice. A percoll (P1644; Sigma) gradient was then performed to remove platelets and debris by layering the 44 % percoll cell suspension over 67 % percoll and centrifuging at 400 g for 20 min at 4 °C without brake. The mononuclear cell layer was collected and washed in PBS-2% FBS buffer.
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7

Germ Cell Sorting and Purification

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Germ cell sorting was as described (Gainetdinov et al., 2018 (link); Yu et al., 2022 (link)). Briefly, we de-capsulated the testis specimens and incubated with 1× Gey′s Balanced Salt Solution (GBSS, Sigma, G9779) containing 0.4 mg/ml collagenase type 4 (Worthington; LS004188) at 33°C for 15 min. Thereafter, we washed the seminiferous tubules twice with 1× GBSS, and incubated them with 1× GBSS containing 0.5 mg/ml trypsin and 1 μg/ml DNase I at 33°C for 15 min. Next, the seminiferous tubules were gently pipetted up and down for 3 min through a Pasteur pipette to homogenize at 4°C on. Trypsin was inactivated with fetal bovine serum (FBS; f.c. 7.5% [v/v]), and the cell suspension was passed through a pre-wetted 70 μm cell strainer. Cells were recovered by centrifugation at 300 × g at 4°C for 10 min, resuspended in 1× GBSS containing 5% (v/v) FBS, 1 μg/ml DNase I, and 5 μg/ml Hoechst 33342 (Thermo Fisher, 62249), and incubated at 33°C for 45 min rotating at 150 rpm. Finally, we added propidium iodide (0.2 μg/ml, f.c.; Thermo Fisher, P3566) directly to the cells which were further filtered through a pre-wetted 40 μm cell strainer. Cell sorting (FACS Core, University of Massachusetts Medical School) was performed as described (Bastos et al., 2005 (link); Yu et al., 2022 (link)).
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8

Tumor Tissue and Immune Cell Extraction

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Mice were euthanized with CO2, and tumor tissues and lymph nodes were collected, minced into small pieces, and digested in 2 mg/ml collagenase type IV (Catalog No: LS004188, Worthington-Biochem) at 37 °C for 1 h, followed by storage in cold PBS. Single cell suspensions of tumor tissues were prepared in PBS containing 10% FBS and 2 mM EDTA, and tissues were disrupted on the surface of a 40 µm cell filter using the plunger of a 1 ml syringe. Peripheral blood was collected by enucleation, and erythrocytes were lysed with ACK Lysing Buffer (ThermoFisher Scientific) to obtain a peripheral blood mononuclear cell suspension. Serum IL6 in mice was measured using an IL6 mouse ELISA kit (ThermoFisher Scientific).
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9

Isolation of Tumor-Infiltrating Lymphocytes

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Single-cell suspensions were prepared from dissected tumors and spleens. Spleens were mechanically disrupted using a plunger end of a 5 mL syringe and resuspended in 1% FBS/PBS after passing through a 70-μm cell strainer (Falcon). Red blood cells were depleted from total splenocytes using 1x RBC Lysis Solution (eBioscience, 00–4333-57). For isolation of tumor-infiltrating lymphocytes, tumor tissue was minced into 1 to 2 mm pieces and digested with collagenase IV (1.25 mg/mL; #LS004188, Worthington), 0.1% trypsin inhibitor from soybean (# T9128, Sigma), hyaluronidase (1 mg/mL; # LS 002592, Worthington), and DNase I (100 mg/mL; # LS002007, Worthington) in complete DMEM for 30 minutes at 37°C. Cell suspensions were passed through a 70-μm cell strainer (Falcon) and resuspended in RPMI media (Gibco). Lymphocytes were isolated from processed tumor tissues by OptiPrep (Sigma) density gradient centrifugation. For experiments requiring ex vivo stimulation and intracellular cytokine staining, regulatory B cells (CD19+CD1dHiCD5+CD21Hi) and conventional B cells (CD19+CD1dLoCD5-CD21Lo) were sorted from single cell splenic suspensions using the BD FACS Aria III cell sorter according to manufacturer’s instructions and UNC flow cytometry core guidelines.
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10

Germ Cell Sorting and Purification

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Germ cell sorting was as described (Gainetdinov et al., 2018 (link); Yu et al., 2022 (link)). Briefly, we de-capsulated the testis specimens and incubated with 1× Gey′s Balanced Salt Solution (GBSS, Sigma, G9779) containing 0.4 mg/ml collagenase type 4 (Worthington; LS004188) at 33°C for 15 min. Thereafter, we washed the seminiferous tubules twice with 1× GBSS, and incubated them with 1× GBSS containing 0.5 mg/ml trypsin and 1 μg/ml DNase I at 33°C for 15 min. Next, the seminiferous tubules were gently pipetted up and down for 3 min through a Pasteur pipette to homogenize at 4°C on. Trypsin was inactivated with fetal bovine serum (FBS; f.c. 7.5% [v/v]), and the cell suspension was passed through a pre-wetted 70 μm cell strainer. Cells were recovered by centrifugation at 300 × g at 4°C for 10 min, resuspended in 1× GBSS containing 5% (v/v) FBS, 1 μg/ml DNase I, and 5 μg/ml Hoechst 33342 (Thermo Fisher, 62249), and incubated at 33°C for 45 min rotating at 150 rpm. Finally, we added propidium iodide (0.2 μg/ml, f.c.; Thermo Fisher, P3566) directly to the cells which were further filtered through a pre-wetted 40 μm cell strainer. Cell sorting (FACS Core, University of Massachusetts Medical School) was performed as described (Bastos et al., 2005 (link); Yu et al., 2022 (link)).
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