The largest database of trusted experimental protocols

10 protocols using mannobiose

1

Characterization of Spruce and Birch Polysaccharides

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mannobiose, mannotriose, mannotetraose, mannopentaose and mannohexaose, xylobiose, xylotriose, xylotetraose, xylopentaose and xylohexaose were from Megazyme (Ireland). Mannose, xylose, 2-picoline borane, 2-aminobenzamide, ethyl acetate, methanol and ammonium formate were purchased from Sigma-Aldrich (Germany).
Acetylated galactoglucomannan (AcGGM) from Norway spruce (Picea abies) was produced in house from dried wood chips79 (link). A simplified (lower DP range) version of this substrate, named GH26-AcGGM was produced by treating the AcGGM with a β-mannanase (R. intestinalis β-mannanase RiGH26).
Acetylated (arabino)glucuronoxylan (AcAGX) was produced in house from birch (Betula pubescens) chips80 (link). A simplified (lower DP range and deacetylated) version of this substrate, named GH10-AGX was produced by treating the AcAGX with sodium hydroxide to remove all acetylations followed by subsequent treatment with the commercial xylanase Shearzyme (Novozymes, Denmark).
+ Open protocol
+ Expand
2

Phosphoric Acid Swollen Cellulose Preparation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Phosphoric acid swollen cellulose (PASC) was prepared as follows. 5 g of Avicel® PH-101 was moistened with water and treated with 150 mL ice cold 85% phosphoric acid, stirred on an ice bath for 1 h. Then 500 mL cold acetone was added while stirring. The swollen cellulose was filtered on a glass-filter funnel and washed 3 times with 100 mL ice cold acetone and subsequently twice with 500 mL water. PASC was then suspended in 500 mL water and blended to homogeneity.
High-purity pachyman (β-d-1,3-glucan), barley β-glucan (β-d-1,3-1,4-glucan), lichenan (from Icelandic moss, β-d-1,3-1,4-glucan), mannan (borohydride reduced), konjac glucomannan (β-d-1,4), carob galactomannan, larch arabinogalactan, wheat arabinoxylan, cellotriose, cellotetraose, cellopentaose, cellohexaose, mannobiose, and xylobiose were purchased from Megazyme. Locust bean gum, carboxymethyl cellulose (CMC), beechwood xylan, and cellobiose were purchased from Sigma. 5-bromo-4-chloro-3-indolyl-β-d-cellobioside was purchased from Santa Cruz Biotechnology.
+ Open protocol
+ Expand
3

Quantification of Oligosaccharides in Palm Kernel Cake

Check if the same lab product or an alternative is used in the 5 most similar protocols
Concentrations of OS in the OligoPKC were assessed using HPLC (2690, Waters, USA) with a COSMOSIL Sugar-Dcolumn (250 × 4.6 mm i.d., 5 μm) according to the method described by Jahromi et al. [9 ]. The mobile phase consisted of acetonitrile and water (65:35 v:v) with flow rate of 0.7 mL/min and column temperature of 35°C. Refractive index detector (2414, Waters, USA) was used for the detection of OS in the sensitivity of 1024 and temperature of 30°C. The sample injection volume was 20 μL, and the running time was 20 min. According to Jaafar and Jarvis [10 ], the cell wall component of PKC consisted of 580 g/kg mannan, and Zhang et al. [11 ] reported the extraction of up to 48.8% of D-mannose from PKC, suggesting that major part of OligoPKC is mannan-based. Therefore, five pure MOS, i.e. mannobiose, mannotriose, mannotetraose, mannopentaose and mannohexaose (Megazyme, Ireland) were used as standards for the assay of OS in this study.
Monosaccharides were detected using the same method described for OS, but the mobile phase was changed to 80% acetonitrile in water (instead of 65% for OS) and flow rate was changed to 1 mL/min. glucose, eructose, mannose and xylose (Sigma-Aldrich, St. Louis, MO, USA) were used as standards.
+ Open protocol
+ Expand
4

Oligosaccharide Composition Analysis via HPAEC

Check if the same lab product or an alternative is used in the 5 most similar protocols
The composition of specific oligosaccharides contained in the HOS preparations (modified minimal salts media) was determined using a Dionex™ ICS-6000 high-performance anion exchange chromatography (HPAEC) system (Thermo Fisher Scientific, Madison, WI) fitted with a CarboPac™ PA200 analytical column (250 mm × 3 mm) and a corresponding microbore guard column (50 mm × 3 mm). The pulsed amperometric detection (PAD) system of ICS-6000 had a AgCl reference electrode and a gold working electrode. The mobile phases were composed of solvent A: 100 mM NaOH, and solvent B: 100 mM NaOH mixed with 320 mM sodium acetate. A gradient elution method was used as follows; hold 100% solvent A for 15 min, then ramp to 50% solvent B at a linear rate for 40 min, afterward increase solvent B to 100% in 1 min and hold constant for 4 min; finally, return the mobile phase to 100% solvent A in 1 min. The eluent flow rate was 0.5 ml/min, injection volume was 10 μl, and the column temperature was 35°C. Pure standards (>95%) of cellobiose, xylobiose, xylotriose, xylotetraose, xylopentaose, xylohexaose, mannobiose, mannotriose, arabinobiose, and arabinotriose, purchased from Megazyme (Wicklow, Ireland), were used to calibrate the instrument.
+ Open protocol
+ Expand
5

Enzymatic Hydrolysis of Hemicellulose

Check if the same lab product or an alternative is used in the 5 most similar protocols
Celluclast 1.5 L, Cellic CTec 2, Viscozyme L (manufactured by Novozymes Corp.), oat-spelt xylan (95590), Amberlite XAD4, and Amberlite IRA958 were purchased from Sigma (St. Louis, MO, USA). The T. reesei β-mannanase (TrMan5A) was obtained as previously described by Hägglund et al. [73 (link)]. AcGGM from thermomechanical pulping (TMP-AcGGM) was obtained as described in Andersson et al. [40 (link)]. Mannobiose (M2), mannotriose (M3), mannotetraose (M4), mannopentaose (M5), mannohexaose (M6), galactosyl-mannotriose (GM3), di-galactosyl-mannopentaose (G2M5), para-nitrophenyl (pNP)-α-D-galactopyranoside, pNP-β-D-glucopyranoside, pNP-β-D-mannopyranoside, pNP-β-D-xylopyranoside and low viscosity locust bean gum (lvLBG) were purchased from Megazyme (Bray, Ireland). Acetone and pullulan molecular weight standards were procured from Merck (Darmstadt, Germany).
+ Open protocol
+ Expand
6

TLC Analysis of Mannose Oligomers

Check if the same lab product or an alternative is used in the 5 most similar protocols
TLC was performed by high performance TLC silicagel plates (Kiselgel 60 F245, Merck). Appropriately diluted samples were applied to the plate (0.5 µl) and eluted twice in ascending mode with a iso-propanol/n-butanol/water mixture (12:4:5). Thymol reagent was used for visualization. A mixture of M1-M6, which contains mannose, mannobiose, mannotriose, mannotetraose, mannopentose and mannohexaose, (Megazyme, Ireland) was used as standards.
+ Open protocol
+ Expand
7

Thin-Layer Chromatography Analysis of Mannan Hydrolysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The analysis of hydrolysis products was performed by thin-layer chromatography using locust bean gum, konjac mannan and guar gum as substrates. The purified rPoMan5A (5 μg) was incubated in a reaction volume of 1 mL with 0.5% of substrate at 60°C in 50 mM acetate buffer (pH 4.0) for 24 h. Aliquots were collected at different time points and boiled for 10 min. All products were freeze-dried and dissolved in a methanol (70%). Then, 5 μL of each aliquot was spotted onto a silica plate (Merck, Germany, 10 × 20 cm), and the plates were developed twice with a solvent system consisted of chloroform-acetic acid-water (3:6:1, v/v) for 3-4 hours. Later, the plates were dried and hydrolysis products were detected by spraying with a 9:1 (v/v) mixture of methanol and sulfuric acid containing 0.2% orcinol and heating at 85°C for 5-10 min. Manno-oligosaccharides (mannose (M1), mannobiose (M2), mannotriose (M3), mannotetraose (M4), mannopentaose (M5), and mannohexaose (M6), Megazyme, Bray, Ireland) were used as standards.
+ Open protocol
+ Expand
8

Enzymatic Hydrolysis of Konjac Glucomannan

Check if the same lab product or an alternative is used in the 5 most similar protocols
Konjac glucomannan (KGM, 95% purity) was purchased from Yunnan Genyub Konjac Resource Crop (Kunming, China). Food-grade mannanase with an activity of 10,000 U/g was produced by Bacillus sp. and was obtained from Amano Enzyme (Nagoya, Japan). Mannose (DP1: Mw = 180.16), mannobiose (DP2, Mw = 342.30), mannotriose (DP3, Mw = 504.40), mannotetraose (DP4, Mw = 666.60), mannopentaose (DP5, Mw = 828.70) and mannohexaose (DP6, Mw = 990.90) were purchased from Megazyme (Bray, Ireland). DPPH (2,2-diphenyl-1-picryl-hydrazyl-hydrate), 6-hydroxy-2,5,7,8-tetramethylchroman-2-carboxylic acid (Trolox) and 2,4,6-tripyridyl-s-triazine (TPTZ) were purchased from Sigma-Aldrich (Singapore).
+ Open protocol
+ Expand
9

Synthesis of Mannopyranosides and Derivatives

Check if the same lab product or an alternative is used in the 5 most similar protocols
Paranitrophenyl β-d-mannopyranoside and methylumbelliferyl β-d-mannopyranoside were purchased from Sigma-Aldrich. Mannobiose, mannotriose, and mannotetraose were purchased from Megazyme (Bray, Ireland). Mannoimidazole and noeuromycin were kind gifts from Professor Spencer Williams and Professor Robert V. Stick, respectively. 2,4-Dinitrophenyl 2-deoxy-2-fluoro-β-d-mannopyranoside was a kind gift from Professor Stephen G. Withers (University of British Columbia).
+ Open protocol
+ Expand
10

Bacillus sp. N16-5 Cultivation and Mutant Construction

Check if the same lab product or an alternative is used in the 5 most similar protocols
Table 1 lists the plasmids and bacterial strains used in this study. Escherichia coli DH5α and BL21(DE3) were grown in LB medium at 37°C and 50 μg/mL kanamycin was added to select plasmid transformants. Bacillus sp. N16-5 was cultivated in Horikoshi-II medium [19 ] in aerobic conditions at 37°C in shaken flasks. SA5 medium [20 (link)] was used in protoplast regeneration of Bacillus sp. N16-5 and neutral complex medium (NCM) [21 (link)] was used in deletion mutant construction.
All substrates (mannobiose, mannotriose, mannotetraose, mannopentose, galactosyl-mannotriose, xylotriose, and xylotetraose) were purchased from Megazyme (Wicklow, Ireland). Locust bean gum was purchased from Sigma Chemical Co. (St. Louis, Mo, USA). All other chemicals were commercially available and of analytical grade.
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!