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4 protocols using mouse anti vdac

1

Cerebellum Protein Expression Analysis

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Cerebellum was dissected from mice at various postnatal time points. Proteins were harvested in lysate buffer (150 mm sodium chloride, 1% Triton X-100, and 50 mm Tris, pH 8.0), separated by SDS-PAGE, and immunoblotted using the following antibodies: mouse anti-VDAC (1:50; Abcam) and rabbit anti-Tom20 (1:50; Santa Cruz Biotechnology). Proteins were detected using horseradish peroxidase-conjugated secondary antibodies and Pierce ECL Western blotting substrate. Protein expression was quantified by densitometry and represented as average protein expression normalized to β-Actin loading control.
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2

Mitochondrial Dynamics Regulation Assay

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Chemicals were purchased from Sigma-Aldrich (Deisenhofen, Germany) except Mdivi-1 (Enzo Life Science, Lörrach, Germany) as well as doxycycline, blasticidin and zeocin (Invivogen, San Diego, CA, USA). Cell culture materials and media were obtained from Biochrom (Berlin, Germany). MitoTracker GreenFM (MTG) and MitoSOX™ Red superoxide indicator (MitoSOX) were purchased from Molecular Probes (Eugene, USA).
The following primary antibodies were used: rabbit anti-DNP (Sigma-Aldrich, Deisenhofen, Germany), rabbit anti-PINK1 (Cell Signaling, Boston, MA, USA), mouse anti-β-actin (Cell Signaling, Boston, USA), rabbit anti-COX IV (Cell Signaling, Boston, MA, USA), rabbit anti-Lon protease (Abcam, Cambridge, UK), mouse anti-GAPDH (Abcam, Cambridge, UK), rabbit anti-Ki-67 (Abcam, Cambridge, UK), mouse anti-CDKN2A/p16INK4α (Abcam, Cambridge, UK), rabbit anti-p21 Waf1/Cip1 (Cell Signaling, Boston, MA, USA), mouse anti-MT-CO1 (Abcam, Cambridge, UK), mouse anti-SDHA (Abcam, Cambridge, UK), mouse anti-VDAC (Abcam, Cambridge, UK) and rabbit anti-Fis1 (Cell Signaling, Boston, MA, USA). Secondary antibodies used for immunoblotting were purchased from LI-COR Biosciences (Lincoln, AL, USA). The FITC-labeled antibody for immunofluorescence was purchased from Invitrogen (Carlsbad, CA, USA).
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3

Protein Extraction and Western Blot Analysis

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S2 cells were homogenized in a RIPA lysis buffer [5 mmol/L Tris–HCl, pH 8.0, 150 mmol/L NaCl, 1% (v/v) IGRPA CA-630, 0.5% (w/v) sodium deoxycholate and protease inhibitor cocktail (Roche)] and centrifuged at 12,000×g for 10 min at 4 °C to pellet nuclei and cell debris. The supernatant was collected and the protein concentration was assayed using a BCA protein assay kit (Beyotime). 20 μg of the protein samples were subjected to 12% sodium dodecyl sulfatepolyacrylamide gel electrophoresis (SDS-PAGE) and transferred to PVDF (polyvinylidene fluoride) membranes. The blotted membranes were immunoblotted with primary antibodies: rabbit anti-Prominin-like (1:2000), mouse anti-Tubulin (1:1000, DHSB E7), mouse anti-VDAC (1:1000, Abcam), mouse anti-Cytochrome C antibody (1:1000, Abcam 13575), mouse anti-ATP5a (1:1000, Abcam), mouse anti-COX IV (1:1000, Abcam), Rabbit anti-CG9172 (ND20) (1:500, Abgent), rabbit anti-HA (1:1000, Abcam), mouse anti-Flag (1:1000, Cell Signaling), rabbit anti-LAMP-1 (1:1000, Abcam). After secondary anti-rabbit horseradish peroxidase antibody labelling (Pierce; 1:5000), ChemiLucent™ ECL detection reagents (Millipore) was used to detect proteins and images were taken using the Chemiluminescence Imaging System (Clinx Science Instruments) as previously reported [34 (link)].
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4

Histochemical and Immunofluorescence Analysis of Muscle

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The fresh-frozen muscle sections were first studied by using routine histochemical techniques including hematoxylineosin (HE), modified Gomori Trichrome (mGT), COX, and succinate dehydrogenase (SDH) staining. Next, the muscle sections were fixed with 4% paraformaldehyde and blocked with 5% normal donkey serum and 0.1% Triton-X in PBS. The following primary antibodies were used: rabbit anti-PABPN1 (1:250 dilution; Cat. No. ab75855, Abcam, Cambridge, MA, USA), and mouse anti-VDAC (1:500 dilution; Cat. No. ab14734, Abcam). Immunolabelled proteins were visualized by Alexa 488-or Alexa 546conjugated secondary antibodies (1:200 dilution; Thermo Fisher Scientific). For immunofluorescence, the sections were counterstained with 4',6-diamidino-2-phenylindole (DAPI; Cat. No. H-1200, Vector Laboratories, Burlingame, CA, USA) and examined by using confocal microscopy (FV1200; Olympus, Tokyo, Japan) or fluorescence microscopy (BZ-9000; Keyence, Osaka, Japan). RGB plot profiles were obtained by using ImageJ 1.50i software (National Institutes of Health).
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