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11 protocols using pda 2998

1

HPLC Analysis of Three Compounds

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For HPLC analysis, we used the HPLC system equipped with a photodiode array (PDA) detector (Waters Alliance e2695, PDA #2998, Waters Corp., Milford, MA, United States). The data were acquired and processed using Empower software (version 3; Waters Corp.). For chromatographic separation of the three compounds, a Sunfire C18 analytical column (250 × 4.6 mm, 5 μm, Waters Corp.) was used, which was maintained at 35°C. The gradient conditions were 10–23% B for 30 min, 23–100% B for 10 min, and 100% B for 10 min. The mobile phases consisted of two solvents: 0.1% (v/v) TFA in water (A) and acetonitrile (B). For scanning chromatograms, PDA detection was performed at 210–400 nm. Column were used at flow rate of 1.0 ml/min and injected volume of 10 μL, respectively.
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2

Quantitative Analysis of Naringenin by HPLC

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Naringenin was purified by HPLC using an Alliance 2695 HPLC with a refrigerated autosampler, a column furnace and a photodiode array detector (PDA) 2998 (Waters Corp.). Naringenin was quantified at its maximum absortion peak (290 nm). The system was equipped with a 3.5 μm particle size XBridge™ C18 (2.1 × 150 μm, Waters Corp.) column.
The culture samples were centrifuged at 13,000 rpm for 5 min and the supernatants filtered through sterile 0.2 μm polyethersulphone (PES) syringe filters (VWR, Intl.). The whole sample (100 ml) was loaded in multiple injections. HPLC conditions were as follows: column temperature 40 °C; the flow was kept at 0.32 ml/min from 0 to 2 min and then increased gradually to reach 0.40 ml/min at 10 min. A mixture of Milli Q water with 0.01 % trifluoroacetic acid (A) and acetonitrile (B) were used as solvent with the following program: 0–2 min increase from 20 to 30 % B and kept at 30 % B thereafter. The peak eluting at 6 min from repeated injections was collected and pooled and the solvent from the pooled preparation was evaporated under low pressure (SpeedVac Savant Sc110, Thermo Sci.). The concentrated solution was lyophilized and kept at −20 °C until NMR analysis and identification. Pure naringenin and genistein (Sigma Ch. Co.) were used as standards.
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3

UPLC Analysis of Reaction Products

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The quantitative analyses of the reaction mixtures were performed using an ultrahigh performance liquid chromatograph UPLC Acquity Arc Waters (Milford, MA, USA) and the products of the reaction were analyzed by two detectors, refractive index (RI 2414) and a photodiode array (PDA 2998). The reactant and the products were separated on a Shodex sugar column SH1011, heated at 30 °C. The eluent was an aqueous solution of H2SO4 (0.005 M) and its flow rate was set at 0.6 mL min−1. The samples to be analyzed were collected at the end of the reaction: 1 mL of the reactant/products solution was diluted in 50 mL of deionized water.
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4

Phytochemical Analysis of Botanical Extracts

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The dried extracts were dissolved in 2 mL of DMSO, filtrated through, and analyzed with high-performance liquid chromatography (Alliance HPLC e2695, PDA 2998, Waters, Milford, MA, USA) and electrospray ionization mass spectrometry (ACQUITY QDa Mass Detector, Waters, Milford, MA, USA). The chromatographic separation was achieved with a column (Symmetry C18, 150 × 4.6 mm, 5 μm) at a flow of 0.8 mL/min with a linear gradient system for 30 min (A: 0.1% formic acid in Water, B: methanol). The column temperature was adjusted to 40 °C, and the injection volume was 5 μL. The exact analytical conditions are described in Supplementary Figures S3–S6. For mass detection, the positive-ion ESI mode was used. The rest of the capillary voltage settings were: Pos: 0.8 kV, gain: 1, and probe: 600 °C, while the cone voltage was set to 15 V.
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5

HPLC Quantification of Organic Acids

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The evaluation of OAs produced by Enterobacter sp. strain 15S was carried out according to Valentinuzzi et al. [35 (link)]. Briefly, The OAs were separated by HPLC on a cation exclusion column (Aminex HPX-87H 300 mm × 7.8 mm, Bio- Rad Laboratories Inc.) with 10 mM H2SO4 as mobile phase at a constant flow rate of 0.6 mL min−1. The OAs were detected at a wavelength of 210 nm (PDA 2998, Waters Spa, Italy). Standard acids were prepared as individual stock solutions using Sigma free acids and then combined to give diluted reference standards.
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6

HPLC Analysis of Phenolic Compounds

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The profiles and contents of phenolic acids and flavonoids in the methanolic SCG extract were analyzed by using high-performance liquid chromatography (HPLC) as described by Kim et al. [40 (link)]. A total of 2 µL of the extract was injected into the HPLC apparatus (Agilent 1100, G1329A ALS, Milford, MA, USA), which was equipped with a photodiode array detector (PDA 2998; Waters, Milford, MA, USA), quaternary pump, and autosampler. Separation was performed on a Symmetry C18 (4.6 mm × 150 mm, 3.5 μm) column (Waters, Milford, MA, USA) at 20 °C. The mobile phase was solvent A (2.5% acetic acid, v/v) and solvent B (acetonitrile). The following gradient was applied: 3–9% B (0–5 min), 9–16% B (5–15 min), and 16–36.4% B (15–33 min), followed by an isocratic run at 100% of B (5 min) and reconditioning of the column (3% of B, 10 min). The flow rate was 1.0 mL/min. The solvent mixture was degassed in an ultrasonic bath before being used as a mobile phase. The concentration of the phenolic acids was determined from standard curves made with known concentrations of each compound. Different wavelengths were used to retrieve peak areas at 280, 320, and 360 nm in order to maximize the generated signal and reduce the detection and quantitation limits.
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7

HPLC-PDA/MS Analysis of Vancomycin and Teicoplanin

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A system of HPLC‐PDA/MS consisting of Waters Alliance HPLC system (e2695) with a PDA detector (PDA 2998), equipped with Waters ACQUITY QDa mass spectrometer was used for chromatographic analysis of the samples. For the Mass Spectrometry analysis, a positive ion mode ESI was carried out.
For the chromatographic separation, a C18 column (4.6 × 150 mm Symmetry C18, 5 μm) was selected with a temperature adjusted to 40°C. The flow rate was 0.8 mL/min, and the injection volume was 10 μL. The used mobile phases were 0.1% TFA in water (eluent A) and 0.1% TFA in MeOH (eluent B), followed by gradient elution. Initial conditions of 95% Α%–5% Β was retained for 2 min, followed by a change to 50% Α%–50% Β within 6 min. Subsequently, the initial ratio of 95% Α–5% Β was reappearance within 7 min, and this composition was kept for 3 min. The run time of analysis was 10 min. For PDA, the UV detection wavelength was 240 nm. For MS detection capillary voltage settings were: Pos: 1.0 kV, Neg: 0.8 kV, gain 1, probe 600°C. The optimum ionic mass fragments were m/z 725.75 m/zfor VANC and m/z 782.65 m/zfor TEIC with cone voltages of 15 and 12 V, respectively.
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8

Molecular Weight Determination by SEC

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Size exclusion chromatography (SEC) was performed on a Waters e2695 Separations Module equipped with an Agilent PLgel 20 μm MIXED-A 300 × 7.5 mm column, a Waters photodiode array detector (PDA 2998), a fluorescence detector (FLR 2475) and a refractive index detector (RI 2414). Samples were dissolved in HPLC grade chloroform (eluent) to a concentration of 2.0 mg mL−1 and filtered with a GE Healthcare Whatman SPARTAN 13/0.2 RC 0.2 μm syringe filter. An injection volume of 100 μL was applied along with an elution speed of 1 mL min−1 at 35 °C. Molecular weights and PDI were calculated from linear polystyrene calibration standards.
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9

HPLC-Based Isoflavone Separation

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Isoflavone separation was performed by a HPLC system including a C18 packed column (4.6 mm × 250 mm, 5 μm) and a PDA-2998 photodiode array detector (Waters, Milford, MA, USA). The isoflavone content was measured as described by Wu et al. (2021) .
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10

Thermodynamic Solubility Profiling of CBZ-SAC Polymorphs

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The profiles were generated based on the solubility of CBZ-SAC FI and FII in the deionized water at different temperatures ranging from 10 to 45 C. Thermodynamic solubilities of FI and FII were determined by taking excess of FI or FII aliquot in 2 mL of deionized water, and stirring was performed. After 6 h, samples were filtered using syringe filter (0.45 mM), and filtrate was subjected to solubility analysis. The solubility of FI and FII was measured in terms of concentration of CBZ using HPLC, and Waters e-2695 equipped with PDA detector (PDA-2998). The HPLC analysis was performed using Waters symmetry C18 column with 5 m column packing material and 4.6 Â 250 mm column dimensions. The HPLC method used is an isocratic and mobile phase comprising 30% water and 70% acetonitrile containing 0.1% trifluroacetic acid as well as flow rate and injection volume used is 1 mL/min and 10 mL, respectively. Thermodynamic models (van't Hoff plots) were constructed using DSC and solubility curves. Accordingly, thermodynamic interrelationship between FI and FII was fully determined.
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