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4 protocols using fv1000 asw 3

1

Quantifying Cell Proliferation with Phospho-Histone H3

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HMEC-1s were plated in 24-well cell-culture plates (Corning Inc., Corning, NY) with glass coverslips (Fisher Scientific, Rochester, NY) at a density of 5×104 cells per well and allowed to attach overnight. After a 24 h treatment with control, SW480-derived EVs (1 µg/mL, 0.5 mL), or EGM-2, cells were fixed with 4% paraformaldehyde and incubated with rabbit anti-phospho-histone H3 (PH3) antibody (Upstate Biotechnology, Lake Placid, NY) followed by AlexaFluor488 goat anti-rabbit IgG antibody (Invitrogen). Nuclei were counterstained with Hoechst (Sigma-Aldrich). Images were visualized under an FV1000 Olympus confocal microscope (Olympus) and acquired using FV1000-ASW 3.0 software (Olympus). The percentage of PH3-positive cells was quantified by counting the cells with co-localized fluorescence signals.
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2

Visualization of EV Uptake in HMEC-1 Cells

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SW480-derived EVs were labeled with DiI (Invitrogen) according to the manufacturer's instructions. Briefly, SW480-derived EVs (100 µg) were incubated with DiI (1 µM) for 15 min at 37°C and centrifuged at 100,000 g for 2 h at 4°C (Type 90 Ti fixed angle rotor with a k-factor of 126.4). The pellets, DiI-labeled EVs, were washed with phosphate buffered saline, and after ultracentrifugation at 100,000 g for 2 h at 4°C (Type 90 Ti fixed angle rotor with a k-factor of 126.4), were resuspended in phosphate buffered saline. HMEC-1s were pretreated without or MβCD (10 mM) for 0.5 h, and then incubated with DiI-labeled SW480-derived EVs (1 µg/mL, 0.5 mL) for 1 h. Cells were then fixed with 4% paraformaldehyde and nuclei were stained with Hoechst (Sigma-Aldrich). Images were visualized under an FV1000 Olympus confocal microscope (Olympus) and acquired using FV1000-ASW 3.0 software (Olympus).
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3

Egr-1 Nuclear Translocation in HMEC-1 Cells

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HMEC-1s were plated in 24-well cell-culture plates (Corning Inc.) with glass coverslips (Fisher Scientific) at a density of 5×104 cells per well and allowed to attach overnight. Cells were treated with SW480-derived EVs (1 µg/mL, 0.5 mL), fixed with 4% paraformaldehyde, and incubated with rabbit anti-Egr-1 antibody (Cell Signaling Technology, Hitchin, United Kingdom) followed by AlexaFluor488 goat anti-rabbit IgG antibody (Invitrogen). Nuclei were counterstained with Hoechst (Sigma-Aldrich). Images were visualized under an FV1000 Olympus confocal microscope (Olympus) and acquired using FV1000-ASW 3.0 software (Olympus). The percentage of Egr-1-positive cells was quantified by counting the cells with co-localized fluorescence signals.
To investigate the effect of signaling inhibitors (BioMol Research Laboratories, Plymouth Meeting, PA, USA) or methyl-β-cyclodextrin (MβCD; Sigma-Aldrich) on Egr-1 nuclear translocation, HMEC-1s were treated with ERK1/2 inhibitor (PD98059, 20 µM), p38 MAPK inhibitor (SB203580, 10 µM), JNK inhibitor (SP600125, 20 µM), Akt inhibitor (BML-257, 20 µM), or MβCD (10 mM) in the presence or absence of SW80-derived EVs (1 µg/mL).
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4

Immunohistochemical Analysis of Lung Tissue

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The harvested lungs were fixed with 4% paraformaldehyde and embedded in paraffin. The embedded lung tissues were sectioned (4 μm thickness), and deparaffinized. The Target Retrieval Solution (DAKO, Glostrup, Denmark) was used for antigen unmasking, and the non-specific binding was blocked with the Protein Block Serum-Free blocking solution (DAKO). The lung tissue sections were incubated with primary antibodies: rat anti-NIMP-R14 (Abcam, Cambridge, United Kingdom), goat anti-CD31 (Santa Cruz Biotechnology), rabbit anti-SP-C (Santa Cruz Biotechnology), or 200 ng/mL of lab-made rabbit IgG polyclonal anti-E. coli OMVs (Jang et al., 2015 (link)). After treating with secondary antibodies conjugated with fluorescent Alexa Fluor dyes (Molecular Probes, Eugene, OR, United States), the lung tissues were counterstained with Hoechst 33258 (Sigma-Aldrich). Representative images were photographed using an FV1000 Olympus confocal microscope (Olympus, Tokyo, Japan) equipped with FV1000-ASW 3.0 software (Olympus). The number of neutrophils per field was measured by counting random fields in fluorescent images from each lung specimen.
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