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19 protocols using xcelligence real time cell analysis instrument

1

Quantitative Cell Dynamics Assays

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Quantitative kinetic measurements of cell migration, invasion, proliferation and adhesion assays were performed using CIM-plate 16 on xCELLigence Real Time Cell Analysis instrument, from ACEA Biosciences Inc. (San Diego, CA, USA) as previously described [21 (link),22 (link)]. The xCELLigence software was used to acquire data and calculate the average migration, invasion, proliferation, and adhesion to collagen IV of all the replicates by increases in the slope (1/h) of the curve during 24 h. Graph displaying change in the slope between the different groups was generated.
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2

Carvacrol Inhibits Colorectal Cancer Cell Growth

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The antiproliferative effect of carvacrol (C7727, Sigma-Aldrich, St Louis, MO, USA) has been studied on HCT-116 and HT-29 colorectal adenocarcinoma cell lines. The cell lines were seeded in a triplicate in 96-well plate (10,000 cells per well). Cell viability was tested after 48 h of incubation with 25–200 µM carvacrol via xCELLigence real-time cell analysis instrument (ACEA Biosciences, Inc (ACEA), San Diego, California, USA).
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3

Comprehensive Analytical Techniques for Chemical Compound Characterization

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Melting points were recorded using the melting- point meter (Electro thermal 9100, Staffordshire, UK). IR spectra were performed on FT-IR spectrometer (FT IR-8101M, SHIMADZU, Kyoto, Japan). 1H NMR and 13CNMR spectra were recorded with a Bruker SpectrospinAvance 400 spectrometer operating at 400 MHz (Bucker GmbH, Ettlingen, Germany) and chemical shifts were measured in ppm relative tetramethylsilane. Elemental analyses were conducted with Vario EL ΙΙΙ apparatus (Elementar Co, Langenselbold, Germany). The reactions and purities of the compounds were monitored by TLC on silica gel 60 F254 aluminum sheets purchased from Merck (Darmstadt, Germany). The TLC plates visualized using UV light (254 and 366nm, CAMAG, Muttenz, Switzerland). Column chromatography was carried out on silica gel 60 F254 glass plates (Merck, Darmstadt, Germany, 60A, 70-230 mesh). Continuously live cell proliferation, morphology and viability with label free assay were performed using xCELLigence Real Time cell analysis instrument (ACEA Bioscience, San Diego, CA, USA). The absorbance was measured for MTT assay by using a Bio-Tek Cytation 3 Cell Imaging Multi-Mode Reader (Elx 800 Microplate Reader, Quant Bio-tek Instruments, Winooski, VT, 195 USA).
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4

In Vitro Assessment of Anti-PD-L1/4-1BB Bispecific Antibody

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Splenocytes from OT-I or C57BL/6 mice were stimulated with 50 ng/mL OVA257-264 and 50 U/mL rhIL-2 overnight (O/N). CD8+ T cells were enriched and co-cultured with B16_OVA-MO4 cells that had been seeded in an xCELLigence E-plate at 7 × 103 cells per well on the previous day (1.05 × 105 T cells per well, effector:target cell ratio 15:1). mbsAb-PD-L1×4-1BB or control antibodies (Table S2) were added at 1 µg/mL and the cells incubated for 120 h. The impedance was measured in 30-minute intervals in an xCELLigence Real-Time Cell Analysis Instrument (Acea Biosciences). Data from impedance measurements were first normalized to the time-point of co-culture start for each treatment condition individually. Subsequently, data were expressed relative to the isotype control-treated co-cultures (mAb-Ctrl set to 100%).
After 48 h of incubation supernatants were removed for cytokine analysis from replicate wells that were not subjected to impedance measurement. Fresh media containing Brefeldin A (BD Biosciences, cat. No. 555029) was added to the cells, followed by incubation for 4 h and flow cytometry analysis. Proliferation analysis based on CFSE dilution was performed using the proliferation modeling tool from FlowJo, the generation peaks were automatically fit and expansion index values were calculated using the integrated formula.
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5

Quantifying Cell Migration and Invasion

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Migration and invasion assays were performed using CIM-plate 16 on xCELLigence Real Time Cell Analysis instrument, from ACEA Biosciences Inc. (San Diego, CA, USA), which allows quantitative kinetic measurement of cell movement from the upper chamber to the lower chamber. Cells were cultured for 24 h until they reach 60–80% confluence followed by 6-h serum starvation [1% fetal bovine serum (FBS)] before they were harvested and adjusted at 30 × 103/100 μL in serum-free media. For migration and invasion, 160 μL of chemotaxis (10% FBS) was added to the lower chamber, and cells (100 μL) were added to the upper chamber. For invasion, 25 μL of Matrigel was used to coat the upper chamber for 4 h in the 37°C incubator prior to the addition of cells. The cells were allowed to settle for 30 min at room temperature before loading the plate into the instrument, and measurements were taken at 15-min intervals for 24 h.
Data acquisition was stopped after 24 h of measurement, and the average migration or invasion of all the replicates was calculated using the xCELLigence software. Migration or invasion signal was considered positive if it has a mean Cell Index of ≥0.1. Rate of cell migration and invasion was assessed by increases in the slope (1/h) of the curve during 24 h, and a graph displaying change in the slope between the different groups was generated.
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6

CAR T Cell Cytotoxicity Assay

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LunX-antigen peptides were plated at 1,000 ng/mL. Control T cells were stimulated with OKT3 (10 μg/mL) for 12 h, but not transfected by lentivirus, and the previous culture medium was changed into the fresh one. After culturing control T cells for 4 days, we co-cultured them with LunX protein in the fresh culture medium. Human CAR T cells (105) were co-cultured with lung cancer cell lines (A549, NCI-H292, NCI-H1650; 105) or LunX. After 24 h, supernatants were harvested, and cytokine expression was measured using ELISAs for IL-2, IFN-γ, and TNF-α (Dakewe Biotech, Shenzhen, China).
Cytotoxicity assays were run on an xCELLigence real-time cell analysis instrument according to manufacturer’s (ACEA Biosciences, San Diego, CA, USA) instructions. In brief, lung cancer cells were seeded at 104 cells per well. After 20 h (when cells had reached exponential growth), CARlunx T cells or CARCD19 T cells were resuspended in fresh complete medium without IL-2 and added to target cells at different ratios of effector cell:target cell. Then, cell growth was measured.
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7

Real-Time ADCC Assay for Cell Killing

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The ADCC assay was performed in xCELLigence Real-Time Cell Analysis Instrument (Agilent, xCELLigence RTCA DP), an impedance-based technology that monitors cell proliferation and attachment in real-time. The day before starting the assay, target CHO/mPSMA_mEGFR cells were plated in E-Plate 16 PET (Agilent #300600890), 40,000 cells/well, to allow them to adhere and reach the exponential growth phase. The following day the human CD11b+ effector cells were preincubated with indicated IgE/IgG antibodies at 5 μg/ml for 1 h, at 37 °C and 5% CO2, after which the unbound antibodies were washed, and 80,000 of IgE- or IgG-coated effector cells were added per well. The cell killing was monitored by the instrument.
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8

Evaluating CLDN6-TCR+ CD8+ T Cells

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Electroporated CLDN6-TCR+ CD8+ T cells (HLA-A*02) were preactivated for 24 hours by coculture with CLDN6-transgenic MDA-MB-231 tumor cells (MDA-MB-231 hCLDN6) endogenously expressing PD-L1. Preactivated CD8+ T cells were transferred to MDA-MB-231 hCLDN6 cells that had been seeded (2 × 104 cells/well) on the previous day in an xCELLigence E-plate (1 × 105 T cells/well; Agilent). Cells were incubated with GEN1046 or control antibodies (0.2 µg/mL) for 120 hours with impedance measured at 2-hour intervals in an xCELLigence Real-Time Cell Analysis Instrument (Agilent). Impedance measurement data were normalized to the time of coculture start for each treatment condition, and data were expressed relative to tumor cells cultured alone (set to 100%). After 48 hours of incubation, supernatants were removed from replicate wells not subjected to impedance measurement for analysis of intracellular GZMB and CD107a. Fresh media containing Brefeldin A (BD Biosciences; 555029) were added to the cells, followed by incubation for 4 hours and flow cytometry.
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9

BZD9L1 Modulates Cell Adhesion Dynamics

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The effect of BZD9L1 towards cell adhesion was determined using the xCELLigence Real-Time Cell Analysis (RTCA) instrument (Agilent Technologies, United States) according to the standard manufacturer’s protocol. Briefly, the cells were resuspended in treatment media conditions: Vehicle control, 2.5 μM, 5.0 μM, and 10.0 μM of BZD9L1. Then, the cells and treatment media were seeded into the E96 xCELLigence plate at 1 × 104 cells per well. The E-96 xCELLigence plate was incubated for 30 min at room temperature and placed on the xCELLigence station in the cell culture incubator. The cellular impedance was continuously monitored every 30 min for 5 h. Impedance recordings from each well in the E96 xCELLigence plate were automatically converted to cell index (CI) values by the xCELLigence RTCA software.
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10

Overexpression of SLURP1 in Corneal Epithelial Cells

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Human corneal limbal epithelial (HCLE) cells and those engineered to overexpress SLURP1 (HCLE-SLURP1) were cultured as described earlier [36 (link), 40 (link)]. Single cell-derived clones of HCLE cells infected with lentiviral particles carrying CMV promoter driven SLURP1 gene were selected by blasticidin [36 (link)]. Based on immunoblots for SLURP1 expression, we selected HCLE-SLURP1-7 and HCLE-SLURP1-14 for moderate and high expression of SLURP1, respectively [36 (link)]. Doubling time for HCLE and HCLE-SLURP1 cells was calculated using xCELLigence Real-Time Cell Analysis (RTCA) instrument that uses cellular impedance to continuously monitor cell health, behavior, and function (Agilent Technologies, Santa Clara, CA). Equal number of cells were seeded in a 96-well e-plate and their growth monitored by xCELLigence System. Doubling time was derived from the exponential phase of the growth curve using RTCA Software Pro. For cell cycle analysis by flow cytometry, HCLE and HCLE-SLURP1 cells were seeded in 6-well plates to obtain around 60% confluence after 48 h of growth. Cells were harvested and fixed in 70% ethanol, re-suspended in PBS with RNAse-A, and stained with Propidium Iodide for FACS analysis. Data were collected on a FACSAria cytometer and analyzed using FlowJo software.
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