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12 protocols using b6ntac

1

Mouse Model of Dextran Sulfate Sodium-Induced Colitis

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Female C57BL/6 mice (B6NTac, Taconic) aged 8–12 weeks were administered 3–3.5% dextran sulfate sodium (DSS) (36,000–50,000 M.Wt, MP Biomedical) in drinking water ad libitum for 6 days. Starting on day 3 of DSS treatment, mice were injected with cytokine or PBS control subcutaneously (s.c.) every other day for a total of five injections. For flow cytometry and histological analysis, mice were euthanized by CO2 asphyxiation on day 10. Colons were removed, flushed, and 2–2.5 cm pieces of the most distal part of the colon were fixed in 10% buffered formalin for histology and IHC analysis. Histological scoring for tissue damage was performed according to Wirtz et al., 2017 (link).
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2

Mouse Husbandry and Handling Protocol

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32 C57BL/6NTac (B6NTac; Taconic Biosciences, Lille Skensved, Denmark) and 46 C57BL/6NRj (B6NRj; Janvier Labs, Le Genest-Saint-Isle, France) four week old male mice. Each B6NTac mouse had fecal samples and ears marked at the vendor three days before delivery, while B6NRj had feces sampled at the receiving AAALAC-accredited barrier protected rodent facilities of the Faculty of Health and Medical Sciences, University of Copenhagen (UCPH), Denmark. Here temperatures were 22 °C + 2 °C, 55% ± 10% humidity, and light cycle was 6 am to 6 pm. Mice were housed four per open transparent cage with a wire lid (1290D Eurostandard Type III, Scanbur A/S, Karlslunde, Denmark) with access to bottled tap water ad libitum, aspen bedding (Brogaarden, Lynge, Denmark), nesting material (Brogaarden), a cardboard shelter (Brogaarden), and enrichment including a mini fun tunnel (Brogaarden) and aspen chew block (Brogaarden). Health monitoring of animals was performed without revealing any pathogens according to FELASA guidelines28 (link). Cages were changed weekly. To reduce anxiety-related variability in metabolic parameters mice were tunnel handled (from six weeks of age) or cupped without restraint on the hand (from 15 weeks of age) as previously described29 (link).
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3

Murine Allografts for Immunology

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Female 8–10 week old C57BL/6 mice or NCr nude (B6NTac, Taconic) were used for allograft experiments. OT-I transgenic mice (Cat# 003831) and Batf3−/− mice (Cat# 013755) were purchased from Jackson Laboratory. All mice were bred and maintained in the animal facility of the New York University School of Medicine. All animal procedures were approved by the New York University School of Medicine Institutional Animal Care and Use Committee (IACUC) under protocol numbers IA16–00507 and IA16–01331.
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4

Murine Allografts for Immunology

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Female 8–10 week old C57BL/6 mice or NCr nude (B6NTac, Taconic) were used for allograft experiments. OT-I transgenic mice (Cat# 003831) and Batf3−/− mice (Cat# 013755) were purchased from Jackson Laboratory. All mice were bred and maintained in the animal facility of the New York University School of Medicine. All animal procedures were approved by the New York University School of Medicine Institutional Animal Care and Use Committee (IACUC) under protocol numbers IA16–00507 and IA16–01331.
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5

Establishing Congenic Wild-Type and Knockout Mouse Strains

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Wild-type mice were obtained from both the Jackson Laboratory (C57BL/6J and B6.SJL-PtprcaPepcb/BoyJ) and Taconic Biosciences (B6NTac and B6.SJL-Ptprca/BoyAiTac). B6 mice were bred for dual congenic expression using a dam or sire from opposing place of purchase to eliminate any strain drift between the two wild-type strains. IL-12p40−/− (B6.129S1-Il12btm1Jm/J) and IL-12p35−/− (B6.129S1-Il12atm1Jm/J) were sourced from the Jackson Laboratory. IL-12p40−/− mice were backcrossed to wild-type mice (B6.SJL-PtprcaPepcb/BoyJ) to generate CD45.1 congenic IL-12p40−/− mice. SMARTA TCR transgenic mice were obtained from Jackson Laboratories (B6.Cg-Ptprca Pepcb Tg(TcrLCMV)1Aox/PpmJ). For all experiments, both female and male mice between 4 and 35 weeks of age were used. Animals were bred and maintained under specific pathogen free (SPF) conditions at the University of Maryland, Baltimore. Experiments were performed with animals at least four weeks of age for bone marrow isolation and six weeks of age for all other experiments and approved by the University of Maryland, Baltimore Institutional Animal Care and Use Committee.
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6

Behavioral Conditioning in Mice

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All mice were obtained from commercial vendors or bred in our colony using naïve mice from the same vendors. Mice were either male or female 129S1/SvImJ obtained from Jackson Laboratories (Stock # 002448; Bar Harbor, Maine), or C57BL/6NTac obtained from Taconic Farms (Model # B6NTac; Hudson, New York City), referred to hereafter as 129S1 and C57BL/6, respectively.
Experiments were conducted using mice aged 9 to 15 weeks at the time of testing with approximately equal number of males and females (males = 97, females = 90). Mice were housed by sex (2 to 5 per cage) in microisolation cages in a temperature-controlled (22°C) vivarium with a 14-hour/10-hour light/dark cycle for a minimum of 4 weeks prior to behavior studies. Mice were provided with ad libitum food and water. All experiments were conducted during the light phase. Prior to fear conditioning, mice were randomly assigned to two groups: US+ (footshocked) and US-(no footshock). Mice in the US+ group received a paired tone (CS+) and a footshock (US+) during fear conditioning. Mice in the US-group were exposed to the same tones but did not receive the paired footshock (US−). The number of mice used in each experiment is given in the figure legends. The Institutional Animal Care and Use Committee of the University of Michigan approved all experiments and guidelines for animal care set by the National Institutes of Health.
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7

Age-Matched Ldl Receptor-Deficient Mice Study

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Age-matched (8–12 weeks old) male (n = 5–13) and female (n = 5–15) Ldl receptor-deficient mice (colony bred from original stock from The Jackson Laboratory; stock # 002207; backcrossed to a C57Bl/6N mice; B6NTac; Taconic Biosciences, Cambridge City, IN, USA) were used in the present study. All study procedures were approved by the University of Kentucky Institutional Animal Care and Use Committee (protocol # 2011-0907 and 2020-3634). This study followed the recommendations of The Guide for the Care and Use of Laboratory Animals (National Institutes of Health). Ldl receptor genotyping was performed as described previously [12 (link)]. The mice were randomly placed by Division of Laboratory Animal Research (DLAR) staff in cages (n = 5/cage) upon weaning. The inclusion and exclusion criteria were followed as below:
Inclusion criteria: body weight > 15 g and 8 weeks of age.
Exclusion criteria: body weight < 15 g and <8 weeks of age. Medical cases not related to aortic pathologies were reported by a DLAR veterinarian.
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8

WT and Knockout Mouse Strains

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Wild-type (WT) mice were obtained from both Jackson Laboratories (C57BL/6J and B6.SJL-PtprcaPepcb/BoyJ) and Taconic Biosciences (B6NTac and B6.SJL-Ptprca/BoyAiTac). B6 mice were bred for dual congenic expression using a dam or sire from opposing place of purchase to eliminate any strain drift between the two WT strains. Wild-type B10.Q/Ai mice were originally obtained from Ron Schwartz, Institute of Allergy and Infection Diseases, NIH, Bethesda, MD. Wild-type B10.A-H2a H2-T18a/SgSnJ mice were obtained from Jackson laboratories. B10.A mice were bred for dual-congenic expression using a dam or sire from opposing genotypes. TCR-αβ KO mice were obtained from the Jackson Laboratories (B6.129S2-Tcratm1Mom/J). CD3ε knockout mice were obtained from NIAID/Taconic mouse contract (B10.A-Cd45a(Ly5a)/NAi N5). Animals were bred and maintained in modified specific pathogen-free facilities at the University of Maryland Baltimore Experiments were performed with animals at least 6 weeks of age and approved by University of Maryland Baltimore Institutional Animal Care and Use Committee.
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9

Murine Microbiome Validation Protocol

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C57BL/6J (#000664) were purchased from Jackson Laboratory. Germ free mice (B6NTac), ASF(+L), and ASF(−L) mice were purchased from Taconic and maintained in Flexible Film Isolators (Class Biologically Clean) with a monthly QC to confirm germ status. Microbiomes were validated by Taconic, upon arrival, and periodically in-house (Supplementary Fig. 2A). All mice had a 12-hour light/dark schedule. All procedures were approved by the University of Virginia ACUC (protocol #1918). All experiments used mice of both sexes unless otherwise noted.
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10

Establishing Congenic Wild-Type and Knockout Mouse Strains

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Wild-type mice were obtained from both the Jackson Laboratory (C57BL/6J and B6.SJL-PtprcaPepcb/BoyJ) and Taconic Biosciences (B6NTac and B6.SJL-Ptprca/BoyAiTac). B6 mice were bred for dual congenic expression using a dam or sire from opposing place of purchase to eliminate any strain drift between the two wild-type strains. IL-12p40−/− (B6.129S1-Il12btm1Jm/J) and IL-12p35−/− (B6.129S1-Il12atm1Jm/J) were sourced from the Jackson Laboratory. IL-12p40−/− mice were backcrossed to wild-type mice (B6.SJL-PtprcaPepcb/BoyJ) to generate CD45.1 congenic IL-12p40−/− mice. SMARTA TCR transgenic mice were obtained from Jackson Laboratories (B6.Cg-Ptprca Pepcb Tg(TcrLCMV)1Aox/PpmJ). For all experiments, both female and male mice between 4 and 35 weeks of age were used. Animals were bred and maintained under specific pathogen free (SPF) conditions at the University of Maryland, Baltimore. Experiments were performed with animals at least four weeks of age for bone marrow isolation and six weeks of age for all other experiments and approved by the University of Maryland, Baltimore Institutional Animal Care and Use Committee.
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