The largest database of trusted experimental protocols

13 protocols using anti beta 3 tubulin

1

Immunofluorescent Staining of Cells and 3D Cultures

Check if the same lab product or an alternative is used in the 5 most similar protocols
For immunofluorescent stains, we rinsed the cells and 3D cultures twice with PBS (phosphate-buffered saline). Cells were then fixed through at room temperature (30 min incubation in fresh 4% paraformaldehyde aqueous solution (157-4, ElectronMicroscopy Sciences) followed by rinsing twice with PBS. Cells were permeabilized through incubation in 0.1% Triton X-100 in PBST (phosphate-buffered saline with 0. 1% Tween 20) for 15 min at RT. Cell-specific binding was blocked through overnight incubation in 3% human serum albumin in PBST at 4 °C. After 24-h incubation with the primary antibody solutions at 4 °C, the cells were washed five times. The following antibodies (and dilutions) were used: anti-PHF (1:1,000, A gift from P. Davies, Albert Einstein College of Medicine), anti-GFAP (1:500, Millipore), anti-P2RY12 (1:400, Sigma), anti-IL3Rα (1:200, Biolegend), anti-beta-tubulin III (1:200, Abcam) and anti-IL-3 (1:200, Invitrogen).
+ Open protocol
+ Expand
2

Immunophenotyping of Mouse Brain Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
TAGs and normal glial cells acutely isolated by FACS were fixed in 4% PFA (Sigma-Aldrich) for 10 min, pelleted and permeabilized with 0.5% Triton X-100 (Sigma-Aldrich) for 4 min. Samples were pelleted again and blocked in 0.5% BSA (Sigma-Aldrich) for 15 min before immunostaining. Antibodies were diluted to 1:100; anti-GFAP (Dako), anti-Nestin (Abcam), anti-beta-tubulin III (Abcam), anti-MBP (Millipore) and 1:10; anti-O4 (RnD Systems) in 100 μl blocking buffer, and samples were incubated in 100 μl staining reaction for one hour at room temperature. Samples were washed in 3 ml blocking buffer, stained with Alexa Fluor 647-conjugated secondary anti-mouse and anti-rabbit antibodies (both from LifeTechnologies) in 100 μl for 45 min at room temperature and washed in 3 ml blocking buffer. Samples were resuspended in 100 μl 1xPBS before analysis, and cells stained with secondary antibodies alone or IgM isotype control (for O4, BD Biosciences) were used to set the gates. For cell cycle analysis, acutely isolated TAGs and glial cells from normal mice brains were fixed in 100% ice cold ethanol for 20 min, washed in 1xPBS and incubated for 30 min in RNase (1 mg/ml, Sigma-Aldrich) and propidium iodide (50 mg/ml, Sigma-Aldrich). All staining was acquired on AccuriC6 (BD Biosciences) and FlowJo (FlowJo, LCC, Oregon, USA) was used for analysis.
+ Open protocol
+ Expand
3

Immunofluorescence Assay for Neurodifferentiation

Check if the same lab product or an alternative is used in the 5 most similar protocols
Cells were treated with either DMSO or ATRA, and then fixed with 4% paraformaldehyde. After permeabilization with TritonX-100 (0.1%), cells were incubated with primary antibody (anti-beta III Tubulin, Abcam) overnight at 4°C, washed with PBST (phosphate-buffered saline, 0.1% tween 20), and then incubated with Alexa Fluor 488 conjugated secondary antibody (Abcam) for 1 h at room temperature. DAPI (4′,6-diamidino-2-phenylindole) (Sigma Aldrich) was used for counter-staining. Fluorescent images were taken with Olympus IX53 inverted microscope.
+ Open protocol
+ Expand
4

Antibody-Based Protein Interaction Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
The following antibodies were used: anti-GFP (Santa Cruz, sc-9996 for coimmunoprecipitation; Abcam, ab32146 for immunoblots), anti-FLAG horseradish peroxidase-conjugated (Sigma, A8592), anti-p-SEK1/MKK4 (Cell Signaling, CST-9151), anti-GST (Santa Cruz, sc-138), anti-alpha-tubulin (Santa Cruz, sc-53030), anti-DLK (ThermoFisher Scientific, PA5-32173 for coimmunoprecipitation and immunohistochemistry; Antibodies Incorporated, 75-355 for immunoblot), anti-GAPDH (Santa Cruz, sc-32233), anti-LC3A/B (Cell Signaling, CST-12741), anti-HA (Abcam, ab9110), anti-Xpress (ThermoFisher Scientific, R910-25), anti-SUMO2/3 (Abcam, ab3742), anti-FLAG (Cell Signaling, 14793S), anti-BRN3A Alexa Fluor 594 (Santa Cruz, sc-8429 AF594), and anti-beta III tubulin (Abcam, ab41489). We dissolved all chemicals in dimethyl sulfoxide (Sigma, D8418-250ML) except for vincristine (Sigma, V8879), which was dissolved in methanol. Controls were treated with dimethyl sulfoxide as vehicle or methanol in the case of vincristine controls. We used vincristine at 200 nM, bafilomycin (Sigma, B1793) at 100 nM, caspase inhibitor (Sigma, 400012) at 1 and 5 μM, pan-caspase inhibitor (R&D systems, FMK001) at 10 and 50 μM, and MG-132 (Sigma, M7449) at 10 μM.
+ Open protocol
+ Expand
5

Evaluating SARS-CoV-2 Receptor Expression in iPSC-Derived Motor Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
Induced Pluripotent Stem Cells-MNs were seeded on coverslips in a 24-well plate, cultured until differentiation, and infected as specified above. At 48 hpi, cells were fixed in PBS containing 4% PFA at RT for 10 min, followed by permeabilization with 0,1% TritonX-100 in PBS for 10 min. Cells were treated with 1% BSA in PBS for blocking at RT for 1 h, and incubated at 4°C overnight with specific primary antibodies. The following primary antibodies were used: anti-beta III Tubulin (1:500, Abcam, Cambridge, UK), anti-SMI-312 (1:1000, Covance, Princetown, NJ, USA) and anti-ChAT (1:200, Chemicon) to assess iPSC-MN differentiation; anti-ACE2 (1:200, Prodotti Gianni), anti-CD147 (1:100, Thermo Fisher Scientific) anti-NRP1 (1:100, Thermo Fisher Scientific) and anti-N Nucleocapsid SARS-CoV-2 (1:1000, BEI Resources) to assess SARS-CoV-2 receptors and infection. Coverslips were then stained with secondary antibodies (Alexa Fluor 488 or 647, 1:500, Abcam) for 45 min at RT and mounted using a medium containing DAPI (Enzo Life Sciences, Milan, Italy). Confocal images were acquired on a TCS SP8 System equipped with a DMi8 inverted microscope and a HC PL APO 40 × /1.30 Oil CS2 (Leica Microsystems, Wetzlar, Germany) at a resolution of 1024 × 1024 pixels (single stack).
+ Open protocol
+ Expand
6

Immunohistochemical Profiling of Neural Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Mice were perfused with 4% paraformaldehyde in PBS (pH7.4) and the brains were subject to postfixation in the same fixative for 24 h. Brains were then cryoprotected in 30% sucrose in PBS, sectioned serially (20 μm) onto Superfrost plus glass slides (Fisher Scientific; Pittsburgh, PA). The brain slices were permeabilized and blocked with PBS solution containing 3% goat serum albumin and 0.3% Triton-X100, and then treated with anti-Ncadherin (1:200, Thermofisher), anti-Notch (1:200, Thermofisher), anti-PS1 antibody R22232 (link) (1:50), and anti-beta III tubulin (1:500, Abcam) overnight at 4°C. The brain slices were washed three times with PBS and treated with secondary antibodies (1:1000, Thermofisher) for 30 min. Subsequently, the slices were washed with PBS, mounted and observed with a confocal microscope (Olympus, Fluoview 3000).
+ Open protocol
+ Expand
7

Immunocytochemical Staining of Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
In the first step of immucocytochemial staining, we fixed the neuron cells with 4% paraformaldehyde after washing them with PBS, and then blocked the cells with 1% bovine serum albumin. In following steps, N2A cells and DACNs were incubated with primary antibody (1:100 anti-beta III tubulin, Abcam, Cambridge, UK) overnight at 4 °C, and then with FITC-conjugated secondary antibodies (Life Technologies, Carlsbad, CA) (1:100). We counterstained the nuclei with Hoechst 33258 (Invitrogen.
Life Technologies, Carlsbad, CA), and then mounted the cells. Eclipse E800 microscope with a VFM epi-fluorescence attachment (Nikon, Melville, NY) was used for observing the stained cells, and the pictures were taken by the SPOT digital camera with SPOT version 1.1 CE software (Diagnostic Instruments, Sterling Heights, MI) attached to the microscope. All experiments were repeated for three times.
+ Open protocol
+ Expand
8

Histopathological and Immunohistochemical Analysis of Tumor Samples

Check if the same lab product or an alternative is used in the 5 most similar protocols
After resection of the tumors, they were fixed in neutralized 10% formalin solution and embedded in paraffin blocks using standard procedures. Paraffin sections were stained with hematoxylin-eosin (HE), and histopathological analysis was performed under a light microscopic observation. Tissue sections mounted on slides were also subjected to immunostaining after deparaffinization and rehydration, and antigen retrieval, according to the manufacturer’s protocol. Antibodies used in this study were anti-beta-III-tubulin (Abcam, ab264113, Cambridge, UK), anti-AFP (α-fetoprotein, Pierce, PA5-21004, Shreveport, LA, USA), anti-TRA-1-60 (Santa Cruz, sc-21705, Dallas, TX, USA), Brachyury (Santa Cruz, sc-374321, Dallas, TX, USA) and anti-PAR (BD Pharmingen, Franklin Lakes, NJ, USA). After several washes with PBS, bound antibodies were visualized using 3, 3′-diaminobenzidine according to the manufacturer’s protocol. The sections were counterstained with hematoxylin and mounted.
+ Open protocol
+ Expand
9

Neurite Outgrowth in Diabetic Neurons

Check if the same lab product or an alternative is used in the 5 most similar protocols
We analyzed the outgrowth of the neurites in dissociated and cultured neurons from the diabetic and non-diabetic animals to evaluate the impairment of the sensory nerves and the improvement of the neuronal injury. The cultured DRG neurons on the coverslips from 6–8 animals per group were fixed for 30 min in 4% paraformaldehyde (0.1 M phosphate buffer, pH 7.4) and processed for dying with the primary rabbit anti-beta III tubulin (1:500, Abcam, USA) and the secondary antibody anti-rabbit IgG Alexa Fluor-594 (1:1000; Invitrogen, Italy). The imaging was carried out with an Olympus fluorescence microscope (BX51, Olympus, Japan). The quantified parameters, the total neurite length (sum of length of all neurites) and maximum neurite length (length of the longest neurite) were analyzed using the Image J software with the Neuron J Plugin42 (link), via identifying cell bodies and tracing all neurites associated with each cell body. For each experiment of the six individual tests for each group, 50 individual neurons from 6–8 animals were evaluated.
+ Open protocol
+ Expand
10

Culturing DRG Neurons with MSC Conditioned Media

Check if the same lab product or an alternative is used in the 5 most similar protocols
Dorsal root ganglia (DRGs) were dissected from adult male Wistar rats (3 months). The neurons were dissociated with 0.2% collagenase and 0.1% trypsin and then centrifuged through 15% bovine serum albumin (BSA) in DMEM (Thermo Fisher Scientific Inc.). DRGs were cultured in 24-well plates on coverslips coated with poly-D-lysine (20 µg/ml) and laminin (1 µg/ml) in DMEM, supplemented with penicillin–streptomycin–fungizone (1%, Lonza) and mitomycin C (0.25 µg/ml) mixed in 1:1 ratio with CM (prepared in the absence of PL) or α-MEM (N = 3 in duplicates for each of the MSC source). After 24 hrs of culture, the cells were fixed with 4% paraformaldehyde in PBS and stained with anti-beta III tubulin (Abcam) and goat anti-mouse IgG Alexa Fluor® 488 (Life Technologies). Images were acquired on Zeiss Axioskop 2 Plus fluorescent microscope. An analysis of the percentage of beta III tubulin positive area was calculated using ImageJ software 1.8.0_112 and related to the positive area of DRGs cultured in the control medium (α-MEM without supplements).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!