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48 protocols using anti cd86 pe

1

ADSC Phenotypic Characterization Protocol

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After pretreatment with TNF-α and IL-1β or the absence thereof, the hADSCs were harvested by digestion with 0.05% trypsin/1 mM ethylenediaminetetraacetic acid (EDTA) (Specialty Media, Millipore, Billerica, MA, USA) and washed with PBS twice. The cell pellets were resuspended in PBS and incubated with anti-CD29-PE, anti-CD44-FITC, anti-CD34-FITC, anti-CD45-FITC, anti-CD80-PE, anti-CD86-PE, anti-HLA-ABC-FITC, and anti-HLA-DR-PE (all from BioLegend, San Diego, CA, USA) for about 30 min in the dark. The cytometry data were processed and analyzed using FlowJo software.
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2

Comprehensive PBMC Immunophenotyping

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PBMCs were isolated by Ficoll-Hypaque density centrifugation (Sigma, St Louis, MO) according to the manufacturer's protocol. PBMCs were stained with anti-CD19-PeCy5.5, anti-CD5-PE, anti-CD72-FITC, anti-CD69-FITC (BD Biosciences, San Jose, CA), anti-CD86-PE (Biolegend, San Diego, CA) and anti-CD100-APC (R&D Systems) or isotype-matched control (BD Biosciences) monoclonal antibodies. Stained cells were analyzed on a multi-color Arial II with FACS Diva version 6.1.3 (BD Biosciences) and the FlowJo Version 7.6 software.
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3

Flow Cytometry Analysis of Macrophages

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The macrophages were collected from the lower chamber for each group, counted, resuspended, and the cell number was adjusted to approximately 1 × 105 per sample. Fluorescent antibodies were diluted with FACS buffer at the following ratios: anti-CD86-PE (1:200, BioLegend, Inc., 305406), anti-CD68-FITC (1:100, BioLegend, Inc., 305206), and anti-CD206-APC (1:200, BioLegend, Inc., 321110). Fifty microliters of each diluted antibody working solution was added to each cell sample, after which the cells were incubated at 4°C for 30 min in the dark. After incubation, 200 μl of FACS buffer was added to each sample. The mixture was centrifuged at 1,000 rpm for 10 min at 10°C, and the supernatant was discarded. Cell samples were analyzed using a FACS Calibur flow cytometer and Cell Quest software (Becton Dickinson, Franklin Lakes, NJ, United States).
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4

Kidney Cell Immunophenotyping by FACS

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FACS analysis was performed according to previous reports [64 (link)]. Briefly, staining of cells for flow cytometry was performed in suspension cell from kidney tissue using between 1 × 105 and 1 × 106 cells per tube. For phospho-flow staining, kidney cells were resuspended in ice-cold PBS and immediately an equal volume of prewarmed BioLegend fixation buffer (catalog 420801, San Diego, CA, USA) was added and samples were incubated at 37 °C for 15 min. The BioLegend intracellular staining with True-Phos Perm Buffer (catalog 425401, San Diego, CA, USA) protocol was followed and all washes were performed with BioLegend Cell Staining Buffer (catalog 425401, San Diego, CA, USA). BioLegend Trustain FcX for mouse (clone 93, catalog 101320, San Diego, CA, USA) were used to block samples before staining. Phospho-flow experiments were collected on a BD LSRII and kidney homogenate analyses were collected using a BD FACS Canto RUO. FlowJo software (BD) was used for analysis of flow cytometry data.
The following antibodies were used: anti-CD86-PE (105007; Biolegend, San Diego, CA, USA), anti-F4/80-FITC (101205; Biolegend, San Diego, CA, USA), anti-CD206-PE (141720; Biolegend, San Diego, CA, USA), and anti-galectin-3-PECy7 (125418; Biolegend, San Diego, CA, USA).
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5

Quantifying M2 Macrophage Polarization

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After the intervention, Mφs were collected and incubated with anti-F4/80-APC/Cy7 (BioLegend), anti-CD11b-FITC (BioLegend), anti-CD86-PE (BioLegend), and anti-CD206-APC (BioLegend) antibodies. Flow cytometry was performed on an FACSCalibur (BD Biosciences) and analyzed using FlowJo software. The gating strategy for M2 polarization was as follows: the CD11b+- and F4/80+-populations were gated first, and then the CD11b+ F4/80+ population was further gated based on CD206 intensity.
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Multicolor Flow Cytometry for Murine and Human Macrophages

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Murine leukocytes were stained with fluorescent monoclonal antibodies against F4/80 (labeled with PE-Cy7,), GR1 (labeled with APC,), CD11b (labeled with V500), CD206 (labeled with APC), CD86 (labeled with PE), anti-rabbit secondary (labeled with alexa 488 and with alexa 405). Stained cells were acquired in a NovoCyte (ACEA Biosciences, San Diego, CA, USA) and analyzed using FlowJo software (Tree Star Inc., Ashland, OR, USA). Macrophage populations were defined according to F4/80, GR1, and CD11b expression, as previously described (24 (link), 28 (link)). For human cell analyses, macrophages were labeled with 1.25 μg/mL anti-HLADR/DP/DQ-FITC (BD Pharmingen) and 1 μg/mL anti-CD86-PE (BioLegend), at 4°C for 30 min. Cells were acquired on a LSRFortessa cytometer (BD Biosciences).
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7

Multiparametric Flow Cytometry Panel

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The following antibodies were used for flow cytometric stainings anti-TACI PE (clone 1A1), anti-CD19 APC-Cy7, anti-CD27 PerCP-Cy5.5 or APC, anti-CD10 PE-Cy7, anti-IgM FITC, anti-CD21 APC, anti-CD69 PE-Cy7, anti-CD86 PE, anti-CD4 APC-Cy7, anti-CD25 PECy7, anti-CD127 PerCP-Cy5.5, anti-CD45RO Pacific Blue, anti-CXCR5 PerCP-Cy5.5, anti-PD-1 PE-Cy7, anti-CD25 PE, anti-CD25 PE-Cy7 (all from BioLegend, San Diego, Calif), anti-CD3 eFluor 605NC, anti-CD21 BD Horizon V450 (Becton Dickinson) and goat polyclonal anti-TACI biotin (R&D Systems). Intracellular staining with anti-Foxp3 Alexa Fluor 488 and anti-BCL6 PE (eBioscience, San Diego, Calif) was performed using the Foxp3/Transcription Factor Staining Buffer Set (eBioscience), in accordance with the manufacturer's instructions.
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8

Flow Cytometry Characterization of DCs and Lymphocytes

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The monoclonal antibodies for the characterization of DC and lymphocytes by flow cytometry were the following: anti-CD3 FITC, anti-CD4 APC, anti-CD8 PE, anti-CD137-biotin, anti-CD11c APC, anti-CD40-PE, anti-CD86-PE, anti-CD80-PE, anti-F4/80-Cy5 and anti-Ia/Ie-FITC from Biolegend (San Diego, CA, USA). The murine melanoma cell line B16-F10 with haplotype H-2Kb was purchased from The American Type Culture Collection, USA. RPMI-1640 culture medium was purchased from Biowest (Nuaille, France). Ge from bovine skin with a protein percentage of 78% and a water content of 8% was used. HA sodium salt from Streptococcus equi, both from SIGMA (St Louis, MO, USA) with a solubility of 5 mg/mL and an MW of ~1.5–1.8 × 106 Da was used.
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9

Characterizing myeloid cells and T cells in TBI

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From mice given different levels of TBI for 12 hours to 3 days, host myeloid cells (CD11b+) from spleen were stained with anti-CD11b-PE, and gated for dendritic cells with anti-CD11c-APC and anti-MHCII-PercpCy55, macrophages with anti-F4/80-FOTC, and myeloid derived suppressor cells with anti-Ly6C-PeC7, and anti-Ly6G-v450. Surface stain for co-stimulatory ligands was performed with anti-CD86-PE, anti-CD80-FITC, anti-CD70-APC, anti-ox40L-PerCP, anti-4-1BBL-v450, anti-ICOSL-PE, and anti-H-2Db (Biolegend). Surface staining of Pmel-1 cells were stained with anti-Vβ13-APC (BD Biosciences) anti-CD62L-FITC, anti-CD44-PerCpCy5.5, anti-IL-17A-PE, anti-IFN-γ-v450, anti-TNF-α-PECy7 and anti-IL-10-FITC (Biolegend) on day 6. For all intracellular staining of cytokines and transcription factors (RORγt-PE and T-bet-FITC; eBiosciences), cultured Pmel cells were restimulated with 1μM human gp10025-33 peptide using irradiated splenocytes (1:10 Pmel:Irradiated splenocytes) from C57BL/6 mice for 5 hours. Monensin (Biolegend) was added after one hour of stimulation with the peptide. After surface staining, intracellular staining with antibodies was performed according to the manufacturer’s protocol using Fix and Perm buffers (Biolegend). Data were acquired on FACSVerse or Accuri (BD Biosciences). All data was analyzed with FlowJo software (Tree Star).
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10

Antiviral Cytokine Analysis of MoDCs

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At 24 h post-stimulation, supernatant and MoDCs were collected for analysis. Antiviral cytokines levels in the supernatant were measured using cytometric bead array [LEGENDplex™ Human Anti-Virus Response Panel (13-plex), BioLegend, San Diego, CA, USA].
Phenotypic maturation of MoDCs was analyzed by flow cytometry using anti-CD14 PB, anti-CD86 PE, anti-MHC II FITC, anti-CD83 FITC, and anti-CD155 APC (Biolegend, San Diego, CA, USA).
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