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6 protocols using anti igf2bp2

1

Protein Expression Analysis in Colorectal Cancer

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Protein from the treated and untreated HCT116 and LOVO cells was extracted by RIPA (Beyotime, Nantong, China). The protein lysates were separated by SDS-PAGE and then transferred onto PVDF membranes. ECL chromogenic substrate was used for densitometry quantification after incubating specific antibodies at 4 °C for 12 h. Protein detection was performed using rabbit monoclonal anti-CCND1 (Abcam, Cambridge, UK, ab134175), anti-CDK4 (Abcam, ab108357), anti-P21 (Abcam, ab109520), anti-casepase3 (CST, #14220), anti-PARP (Proteintech, Rosemont, IL, USA, 13371-1-AP), anti-PDCD4 (Abcam, ab80590), anti-Vimentin (CST, #5741), anti-N-cadherin (Abcam, ab76011), anti-E-cadherin (Abcam, 76011), anti-METTL3 (Proteintech, 15073-1-AP), anti-IGF2BP2 (Proteintech, 11601-1-AP),anti-FLAG (Proteintech, 20543-1-AP), anti-pAKT (CST, #4060), anti-AKT (CST, #9272), anti-PI3K (CST, #4249), anti-pPI3K (CST, #4228). GAPDH (Affinity, West Bridgeford, UK, AF7021) was applied as the internal control.
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2

Comprehensive Western Blot Analysis

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Western blot assay was conducted as previously described [24 (link)]. Antibodies used in this study were as follows: anti-GAPDH (10494-1-AP, Proteintech), anti-AKT (C67E7, Cell Signaling Technology), anti-pAKT (S473) (193H12, Cell Signaling Technology), anti-PI3K (Y388, Abcam), anti-PI3K (p110) (Y384, Abcam), anti-S1PR3 (EPR454, Abcam), anti-EGR2 (EPR4004, Abcam), anti-IGF2BP1 (22803-1-AP, Proteintech), anti-IGF2BP2 (11601-1-AP, Proteintech), anti-IGF2BP3 (14642-1-AP, Proteintech), anti-WTAP (10200-1-AP, Proteintech).
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3

RNA Binding Protein Interactome Analysis

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RIP experiments were conducted using a Magna RIP Kit (series number: 17700, Millipore) referring to the manufacturer’s instructions. T24 cells were lysed in complete RNA immunoprecipitation (RIP) lysis buffer, and the cell extract was incubated with magnetic beads conjugated with anti-ILF3, anti-IGF2BP2 (Cat No: 11601-1-AP, proteintech) and anti-IGF2BP3 (Cat No: 14642-1-AP, proteintech) with rotation at 4 °C overnight. After, proteinase K was used to eliminate the proteins bound to the beads. MeRIP experiments were performed with a Magna MeRIP™ m6A Kit (Cat. 17-10499) (Millipore) according to the manufacturer’s instructions. Co-precipitated RNA was detected by qRT-PCR.
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4

Western Blot Analysis of RNA Binding Proteins

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The tissue or cell was cleaved for 20 minutes with RIPA (Beyotime) lysate on ice. After centrifugation, the protein was quantified using a BCA protein quantitative kit (Beyotime). The protein concentration was determined by the protein standard curve, and the protein was adjusted into the proper concentration. Sample loading buffer (5×) (Beyotime) was added and the mixture was boiled at 100℃ for 5 minutes. The PAGE glue was prepared according to the molecular size of the corresponding protein and electrophoretic separation was performed after adding samples. The membrane was then transferred by constant current 270 mA for 90 minutes. We blocked the membrane with 5% milk, it was incubated with primary Ab then secondary Ab, and finally scanned and recorded with an Odyssey infrared scanner, semiquantified with internal reference GAPDH. Antibodies used in this experiment were as follows: anti‐GAPDH (1:5000, Cat# ab8245, Cat#ab9485; Abcam), anti‐METTL14 (1:1000, Cat#669602; BioLegend), anti‐YTHDF2 (1:1000, Cat#ab220163; Abcam), anti‐YTHDF1 (1:1000, Cat#17479‐1‐AP; Proteintech), anti‐YTHDF3 (1:1000, Cat#ab220161; Abcam), anti‐IGF2BP2 (1:1000, Cat#11601‐1‐AP; Proteintech), and anti‐IGF2BP3 (1:1000, Cat#14642‐1‐AP; Proteintech).
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5

Immunohistochemical Analysis of Oncogenic Proteins

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Tumor tissues were fixed with 4% paraformaldehyde for 24 h and then embedded in paraffin. Paraffin-embedded slices (4 μm) were dried at 62 °C for 60 min and dewaxed twice in fresh xylene for 30 min, followed by hydration using gradient alcohol. After antigen retrieval in citrate buffer at 100 °C for 10 min, the slices were blocked in 5% bovine serum albumin for 1 h and incubated at 4 °C for 12 h in primary antibodies, including anti-GLI1 (Santa Cruz Biotechnology, 1:200), anti-METTL3 (BOSTER Biological Technology, 1:500), anti-METTL14 (BOSTER Biological Technology, 1:500), and anti-IGF2BP2 (Proteintech1:500). Next, the slices were incubated with biotin-labeled secondary antibodies (BOSTER Biological Technology) for 60 min and incubated with horseradish enzyme-labeled chain avidin solution (BOSTER Biological Technology) for 30 min at room temperature. Positive staining was visualized with brown 3,3’-diaminobenzidine tetrahydrochloride (DAB, ZSGB, Beijing, China) and counterstained for 3 min using hematoxylin. Finally, the slices were dehydrated by increasing concentrations of ethanol and xylene and sealed with neutral balsam. Images were taken by a microscope (Olympus, Japan) with ×200 magnification.
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6

Quantitative Protein Expression Analysis

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Western blot analysis was performed as described previously [91 (link)] using anti-METTL3 (Cat. no. 15073-1-AP; 1:1,000), anti-IGF2BP1 (Cat. no. 22803-1-AP; 1:1,000), anti-IGF2BP2 (Cat. no. 11601-1-AP; 1:1,000), anti-HNRNPC (Cat. no. 11760-1-AP; 1:5,000), and anti-HNRNPA2B1 (Cat. no. 14813-1-AP; 1:2,000) antibodies, all of which were purchased from Proteintech. Anti-GADPH antibody (Affinity; Cat. no. #T0004; 1:3,000) was used to determine GAPDH protein levels. The target protein bands were quantified using the ImageJ v1.53a software (NIH, Bethesda, Maryland, USA). Differential expression was determined by calculating the ratios of target protein values for tumor tissues relative to the corresponding paired adjacent noncancerous lung tissues followed by log2FoldChange for each patient.
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