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10 protocols using α amylase

1

Preparation and Characterization of PVA-Starch Films

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4.4'-methylenebis(cyclohexyl diisocyanate) (H 12 DI) and dimethyl sulfoxide (DMSO) were purchased from Sigma-Aldrich, France. Acetone was purchased from Reachem Slovakia, Slovakia. Diethyl ether was purchased from LACH-NER, Czech Republic. Sodium chloride was purchased from Aldrich, Germany. Starch from potato was purchased from Beroxfood, Germany. Poly(vinyl alcohol) (PVA), M w 100000 (degree of hydrolisation 86-89 mol%, viscosity (4% in water, 20°C) is 34-45 mPa•s), was purchased from Fluka, Switzerland. PVA was dried under vacuum at 60°C for 24 h and kept in a desiccator. All other reagents were used as received.
Maltogenic α-amylase (EC 3.2.1.133) (4000 U/ ml) from Bacillus stearothermophilus (BsMa) and α-amylase (EC 3.2.1.1) (25000 U/ml) from Bacillus subtilis were obtained from Novozymes, Denmark. Commercial enzymes preparations were used as purchased without additional purification.
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2

Enzymatic Manipulation and Purification

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Restriction enzymes (NdeI and HindIII), DNA polymerase PrimerSTAR HS and rtaq, calf intestine alkaline phosphatase, agarose, and nucleic acid electrophoresis standards were purchase from Takara Biotechnology Co, Ltd. The bacterial genomic DNA extraction kit, agarose gel DNA recovery kit, and EZ-10 spin column plasmid mini-prep kit were obtained from Tiangen Biotech Co., Ltd (Beijing, China). PCR primers were synthesized by Genscript Biotech Corporation (Nanjing, China). The protein electrophoresis standards and polyacrylamide gel electrophoresis kit were obtained from Beyotime Biotechnology (Shanghai, China). α-Amylase, pullulanase, and maltogenic amylase were obtained from Novozymes (Copenhagen, Denmark). All other chemicals were purchased from Sinopharm Chemical Reagent Co., Ltd. (Shanghai, China) unless otherwise indicated.
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3

Efficient Starch Liquefaction and Saccharification

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The application effect of the recombinant AmyBa was analyzed as follows. First, 10% (m/v) cornstarch suspended in 50 mM MES (pH 6.5)) was gelatinized at 95 °C with stirring for 30 min, followed by the addition of thermostable α-amylase (capable of processing 10 U/g starch; Novozymes) and incubation at 95 °C for 30 min to liquefy the starch slurry. The pH was then adjusted to 4.0, and the temperature increased to 100 °C to inactivate the enzyme, followed by cooling to 50 °C and pH adjustment to 6.0. β-amylase (15 U/g starch) and pullulanase (1 U/g starch) were then used for one-step saccharification with incubation in a shaking water bath (200 rpm) at 50 °C for 6 h. Samples were then removed and pretreated at 100 °C for 10 min to inactivate the enzymes.
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4

Chokeberry Pomace Powder Extrusion Trials

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Extrusion trials were performed using commercial chokeberry (Aronia melanocarpa) pomace powder (CPP) (Aronia Original Naturprodukte GmbH, Dresden, Germany) [20 (link)]. Chemicals and reagents of analytical purity grade were obtained from Merck KGaA (Darmstadt, Germany), unless stated otherwise. Amyloglucosidase (E-AMGDFPD, from Aspergillus niger, 36,000 U/g), α-amylase (E-PANAA, from pig pancreas 100,000 U/g), protease (E-BSPRPD from Bacillus licheniformis 9000 U/g), Celite 545 and endo-arabinanase (EC 3.2.1.99, from A. niger, 9 U/mg) were from Megazyme (Bray, Ireland) and Amberlite FPA53 and Ambersep 200 from Rohm and Haas Europe (Frankfurt, Germany). Thermostable α-amylase (Thermamyl 120 L, EC 3.2.1.1, from B. licheniformis, 120 KNU/g), protease (Alcalase 2.5 L, EC 3.4.21.62, from B. licheniformis, 2.5 AU/g), and Amyloglucosidase (AMG 300 L, EC 3.2.1.3, from A. niger, 300 AGU/g) were a gift from Novozymes, (Bagsværd, Denmark). Rotihydroquant C5 and D used for Karl Fischer titration as well as cyanidin-3-O-glucoside (≥96%), cyanidin chloride (≥97%), 5-caffeoylquinic acid (≥97%), quercetin-3-O-glucoside (≥99%), and quercetin dihydrate (≥99%) used as PP standards were obtained from Carl Roth GmbH & Co. KG (Karlsruhe, Germany). Ultrapure water was used for all experiments.
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5

Quantifying Microbial Biomass in Culture

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Thirty milliliters of culture broth were periodically harvested from shaking flask cultures. The sampled broth was centrifuged at 1500×g (4 °C, 1 h) in conical tubes, and the supernatant and precipitate were separated. The collected supernatant was used to assay alizarin concentration and enzymatic activity.
A membrane filter method was used to measure dry cell mass. Briefly, after harvesting and centrifuging 30 ml of culture broth and separating the supernatant and precipitate as described above, the precipitates were re-suspended in 30 ml of 1 mM CaCl2 and then treated with 10 μl of α-amylase (Novozymes) at 70 °C for 1 h. Thereafter, the suspension was collected on a cellulose acetate membrane filter (pore size, 0.8 μm), which was subsequently dried at 80 °C for 24 h. The dry cell mass was then calculated from the total weight minus the weight of the membrane filter.
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6

Cellulase Production and Characterization

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SPRs and high sugar tolerant instant dry yeast were provided by Shandong Bio Sunkeen Co., Ltd, Jining, Shandong, China. The cellulase solutions were produced by P. oxalicum JUA10-1, T. reesei T1, T. reesei TX and Aspergillusniger, which are laboratory-maintained filamentous fungi [6 (link)]. T. reesei TX was obtained as follows: the xylanase III gene (Genbank accession number: BAA89465.2) was replaced by β-glucosidase 1 (bgl 1, Genbank accession number: KJ739789.1) derived from A. niger under the control of the T. reesei T1 xylanase III promoter. The methods for cellulase production were as described else [11 (link)]. The commercial pectinase solution was generously provided by Qingdao Vland Biotech, Qingdao, Shandong, China. The α-amylase (Novozymes (China) Biotechnology Co., Ltd) and α-glucosidase (Shandong Longda Bio-products Co., Ltd) were generously provided by Jiang Su Lianhai Biological Technology Co., Ltd. Citric pectin, polygalacturonic acid, soluble starch, and p-nitrophenyl-α-D-glucopyranoside were purchased from Sigma-Aldrich, St. Louis, MO, USA. Whatman No. 1 filter paper was purchased from Hangzhou Whatman-Xinhua Filter Paper, Hangzhou, Zhejiang, China. All other chemicals were bought from Sinopharm Chemical Reagent, Shanghai, China.
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7

Coix Seed Fermentation and Bioactives Analysis

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Coix seed was obtained from the local market, which is origin from Chifeng, Inner Mongolia. Lactobacillus plantarum NCU137 powder was preserved at −20 °C in our laboratory. The α-amylase (120,000 U/g) and amyloglucosidase (100,000 U/g) were purchased from Novozymes (Copenhagen, Denmark). Papin (650,000 U/g) was provided by Pangbo Enzyme (Guangxi, China). Antidiuretic hormone (ADH) ELISA kit was obtained from Enzyme-linked Biotechnology (Shanghai, China). Na+/K+ ATPase activity, IL-6, IL-4, IL-10 and IFN-γ ELISA kits were purchased from SenBeiJia (Jiangsu, China). The blood urea nitrogen (BUN) and ammonia kits were provided by Jiancheng (Jiangsu, China). IgA, IgM and IgG ELISA kits were obtained from USCN (Wuhan, China). All other drugs and reagents used were of analytical grade (Sigma, USA).
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8

Corn Bran Bioconversion Optimization

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Corn bran was obtained from Jingliang Co., Ltd. (Suihua, China). Alkali protease (2×105 U/g), glucoamylase (1.5×105 U/g), and α-amylase (2×105 U/g) from Novozymes Biotechnology Co., Ltd. (Shanghai, China). α-glucosidase (50 U/mg), and α-amylase (derived from pig pancreas, 50 U/mg) were purchased from Sigma Aldrich Trading Co., LTD. (Shanghai, China), glucose content detection kit: Solaibao Co., LTD. (Beijing, China). Lactobacillus acidophilus (BNCC336636) and Bifidobacterium longum (BNCC187962): Beina Biotechnology Co., Ltd. (Beijing, China).
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9

Enzymatic Pretreatment of Black Wheat

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The black wheat seed was provided by the Cotton Research Institute of the Shanxi Academy of Agricultural Sciences (Taiyuan, China). The xylanase (food grade 50,000 U/g), cellulase (food grade 50,000 U/g), high-temperature α-amylase (food grade 40,000 U/g), and acid protease (food grade 700,000 U/g) were obtained from Solarbio (Beijing Solarbio Technology Co., Ltd., Beijing, China). The α-amylase (15 U/mg) and pepsin (474 U/mg) were purchased from Novozymes (Bagsvaerd, Denmark).
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10

Pineapple Bioactive Compound Extraction

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Ripened pineapple fruits were purchased from a commercial orchards located in Xuwen country (Guangdong, China). α-Amylase, neutral protease and cellulase R-10 were bought in Novozymes Biotechnology Co., Ltd. (Copenhagen, Danish). 1,1-Diphenyl-2-picrylhydrazyl (DPPH), glucose, cholesterol and sodium cholate were purchased from Sigma Aldrich Chemical Co. (Milwaukee, WI, USA). All other reagents were of analytical grade.
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