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10 protocols using fa 11

1

Kidney Leukocyte and Apoptosis Analysis

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Immunoperoxidase staining for leukocytes was performed on 2% paraformaldehyde-lysine-periodate-fixed kidney cryostat sections (4μm) using anti-CD68 (FA-11, Serotec, Oxford, UK) and anti-CD3 (KT3, Abcam) antibodies according to established protocols.[5 (link)] To assist leukocyte counting, cell nuclei were weakly stained with hematoxylin. The number of macrophages (CD68+) and T-cells (CD3+) was assessed in 20 glomeruli per kidney section. Immunoperoxidase staining for apoptotic cells was performed on methylcarn-fixed paraffin-embedded kidney sections (4μm) using an antibody to activated caspase-3.[5 (link)] The number of apoptotic cells (activated caspase-3+) in cortical tubules was assessed in each animal and recorded as apoptotic cells per 1000 tubule cross-sections (tcs). All scoring was performed on blinded slides.
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2

Identification of Kupffer Cells and FasL Expression

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The MNCs were incubated for 15 min at 4 °C with Fc-blocker (2.4 G2; BD PharMingen, USA) to prevent any nonspecific binding. For identification of Kupffer cells, MNCs were stained with a FITC labeled anti-F4/80 antibody (Ab) (BM8, eBioscience, San Diego, CA. USA), PE-Cy5 labeled CD11b Ab (M1/70, BD PharMingen), and biotin labeled CD68 Ab (FA-11, SEROTEC, Oxford, UK) and developed with PE-streptavidin (eBioscience). For analysis of FasL expression, a PE labeled FasL antibody (Kay-10, eBioscience) was used. Flow cytometric analysis was performed using a Cytomics FC500 instrument (Beckman Coulter, Indianapolis, IN, USA).
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3

Immunohistochemical Analysis of CD68+ Macrophages

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Mice were euthanized with CO2 and hind paw skin was dissected and fixed for 4 hours in 4% PFA, followed by overnight cryoprotection in sucrose (30% in PBS, pH 7.4) at 4 °C. The tissues were embedded in optimal cutting temperature medium (Tissue-Tek®, Sakura Finetek, Torrance, CA) and were flash-frozen in cold isopentane. Three series of transversal sections (thickness 8 μm) were prepared using a cryostat. After rinsing with PBS, the sections were blocked and permeabilized with 0.1% Tween-20 in PBS containing 5% normal donkey serum for 30 min at room temperature. Immunostaining was performed by overnight incubation at 4 °C with an anti-CD68 primary antibody (Serotec, FA-11, 1:200, #MCA1957), followed by incubation for one hour at room temperature with a secondary anti-rat Alexa Fluor 594 donkey antibody (Invitrogen cat. #A21209; 1:200). Nuclei were stained with DAPI (1:250 in PBS) for 10 min at room temperature and slides were mounted with fluorescence-safe mounting medium. Images were obtained at 10x or 40x magnification using a Keyence BZ-X710 fluorescence microscope coupled with BZ-X Analyzer software (Keyence).
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4

Immunohistochemical Analysis of Muscle Fiber Composition

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Transverse sections of 8 μm were fixed in ice-cold acetone for 8 min. For CD11b (rat monoclonal M1/70, 1:300, BD Pharmingen), CD68 (rat monoclonal FA-11, 1:100, AbD Serotec), and laminin γ1 chain (rabbit polyclonal 1083 + E1, 1:100, kindly provided by Dr. T. Sasaki), sections were blocked in 3% BSA in PBS at RT for 30 min followed by incubation in primary antibody at RT for 1 h. For embryonic myosin heavy chain (mouse monoclonal F1.652, 1:10, Developmental Studies Hybridoma Bank), sections were blocked in 4% goat serum and 0.05% Triton-X in PBS at RT for 40 min followed by incubation in primary antibody at RT for 90 min. Primary antibodies were incubated with appropriate secondary antibodies for 60 or 45 min (embryonic myosin heavy chain). Antibody stained sections were analyzed using a Zeiss Axioplan fluorescent microscope using Openlab 3 and an ORCA 1394 ER digital camera. The percentage of embryonic myosin heavy chain–positive fibers was obtained by counting the number of fibers positive for embryonic myosin heavy chain in a whole quadriceps section and dividing by the total number of myofibers.
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5

Immunofluorescence and IHC Staining Protocols

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The following primary antibodies were used for immunofluorescence staining at the indicated dilutions: anti-GFAP (1:1000, Dako, Z033429-2), anti-F4/80 (1:50, Abcam, AB6640), human anti-Cathepsin B (1:1000, R&D, AF953), murine anti-Cathepsin B (1:500, R&D, AF965), human anti-CD68 (1:1, Dako, PG-M1), and murine anti-CD68 (1:3000, Serotec, FA-11). The following primary antibodies were used for IHC at the indicated dilutions: human anti-CD163 (1:200, Vector, 10D6), human anti-CD68 (1:200, Dako, M0876), anti-collagen IV (1:200, Vector labs, PK6101), murine anti-GFP (1:100, Abcam, AB1218), and human anti-CCR2 (1:400, Novus biologicals, E68). JPM-OEt (100 mg/kg/day) was administered intraperitoneally in 30% DMSO/70% PBS as previously described (19 (link)).
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6

Immunohistochemical Staining and Quantification

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Using VECTASTAIN ABC-HRP Kits (Vector Labs), 10 µm sections were stained with antibodies against CD68 (biotinylated clone FA-11, 1:10, AbD Serotec), CD31 (1:100, BD Pharmingen), laminin (1:300, Abcam), α-actin (clone ab5694 1:200, Abcam), or anti-TSP-1 Ab4 (clone 6.1 1:100, Thermo). Secondary antibodies were included in the species-specific kit, followed by ImmPACT DAB peroxidase substrate (Vector Labs). Slides were scanned using Leica SCN400 or Aperio AT2 at 20X magnification. Positive staining in the images was quantified using Photoshop CS2 (Adobe) and Image Pro Plus (7.0).
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7

Liver Assessment and Cell Quantification

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Hematoxylin/eosin stained liver sections were assessed by Suzuki’s score. Liver specimens, stained with Alexa Fluor 488 anti-CD68 (FA-11; 5μg/ml, BIO-RAD, Hercules, CA), FITC anti-Ly-6G (1A8; 5μg/ml, BD Biosciences, San Jose, CA), and PE anti-CDK2 (78B2; 5μg/ml, Cell Signaling Technology, Danvers, MA) were analyzed blindly.
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8

Immunofluorescence Labeling of Heart Valve Tissue

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For immunofluorescence labeling, 5 µm thick cryosections from heart valve tissue of all experimental groups were fixed in ice-cold acetone for 10 min followed by ice-cold 80 % methanol for 5 min. The rat-anti-mouse monoclonal antibodies of 30-F11 (BD Biosciences, Heidelberg, Germany) and FA-11 (Bio-Rad Laboratories GmbH, Muenchen, Germany) were applied for CD45 and F4/80 detection respectively, and allowed to incubate for 60 min at room temperature. The cryosections incubated with the rat-anti-mouse monoclonal antibodies were rinsed three times in TBS-T washing buffer and were then incubated with Cy3-conjugated AffiniPure Donkey Anti-Rat IgG (Jackson Immunoresearch Laboratories Inc., Pennsylvania, USA) for 45 min at room temperature. After rinsing in TBS-T buffer and distilled water, sections were mounted in Vectashield H1200 mounting medium containing DAPI (Linaris biologische Produkte GmbH, Wertheim-Bettingen, Germany) and stored at −20 °C. Antibody specificity control staining was performed in accordance but by omitting the primary antibodies. Immunofluorescence labeling was analyzed with the LSM 9000 (Aiyscan 2) microscope using the ZEN software (both Carl Zeiss, Germany).
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9

Immunohistochemistry of Microglia and Astrocytes

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30μm microtome-cut sagittal sections were incubated in X34 for one hour at room temperature in 60% PBS/40% EtOH mix; pH was adjusted with 1N NaOH. Following this, sections were washed briefly with 60% PBS/40% EtOH before blocking in 5% donkey or goat serum for 1h at room temperature. Primary antibodies were diluted in blocking buffer and incubated at 4°C overnight with slow agitation unless mentioned otherwise. Primary antibodies were used as follows: IBA1 (1:500; 019-19741, Fujifilm or NB100-1028, Novus Biologicals), CD68 (1:100; FA-11, BioRad), P2RY12 (1:100 at room temperature, S16007D, BioLegend), TMEM119 (1:500; E3E1O, Cell Signaling Technology), Clec7a (1:50 at room temperature; mabg-mdect, InvivoGen), GFAP (1:2000; 2E1.E9 Alexa Flour 488-conjugated, BioLegend), 6E10 (1:1000; Alexa Flour 647-conjugated, BioLegend), NeuN (1:2000; ab104224, Abcam), LAMP1/CD107a (1:500; AF4320, Novus Biologicals), CathepsinB (1:50; AF965, R&D Systems), Cathepsin D (1:50; AF1029, R&D Systems). The next day, sections were washed and incubated with secondary antibody diluted in blocking buffer, followed by a 4′,6-Diamidin-2-phenylindol (DAPI, 5μg/mL) where appropriate before mounting sections onto slides (Prolong Gold Antifade reagent, Thermo Fisher Scientific).
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10

Macrophage Quantification in Muscle Cryosections

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Muscle cryosections (5 mm) were stained for the presence of macrophages, using anti-mouse anti-F4/80 antibody (Ab; BM-8; Invitrogen, Carlsbad, CA) and anti-mouse CD68 Ab (FA-11; Bio-Rad AbD Serotec, Raleigh, NC), as previously detailed. 18 To combine immunostaining with histopathologic analysis, we counterstained with hematoxylin and eosin. To determine the number of proliferating macrophages, we stained cryosections of muscle with anti-mouse CD68 Ab, and anti-mouse Ki-67 Ab (SP6; Vector Laboratories, Burlingame, CA), followed by fluorescein isothiocyanate (FITC)-conjugated goat anti-rat IgG Ab (Invitrogen) and cyanine (Cy)3-conjugated goat anti-rabbit IgG Ab (Invitrogen). We enumerated the number of CD68 þ /Ki-67 þ cells per field in the entire cross section.
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