Sample reconstitution was performed in 300 μl of water. In all, 250 μl aliquot of reconstituted sample material were used for individual sample preparation of 96-well plates including the addition of 25 μl of full RP 2× labelled standard mix (
l-glutamine-
13C
5;
l-glutamic acid
13C
5; creatinine-methyl-D
3; cytidine-5,6-D
2; citric acid
13C
6;
l-isoleucine-
13C
615N;
l-leucine-13C
6;
l-phenylalanine-
13C
915N; hippuric acid-D
5, benzoic acid-
13C
6, octanoic acid-
13C
8,
l-tryptophane-
13C
1115N
2). In addition, 50 μl aliquots of each sample were used for pooling and generation of QC sample. For chromatographic separation a 2 μl aliquot of extracted metabolites from each sample was injected onto a reverse-phase 150 × 2.1 mm ACQUITY 1.8-μm High Strength Silica (HSS) column (Waters Corp.) kept at 45 °C using an
ACQUITY UPLC system (Waters Corp.). The mobile phase consisting of 0.1% v/v
formic acid (Fisher Scientific) in water (A) and acetonitrile containing 0.1%
formic acid (B, Sigma-Aldrich). Each sample was resolved for 12.65 min at a flow rate of 0.5 ml/min. The gradient consisted of 99% A and 1% B for 0.1 min, a ramp of curve 6–100% B from 0.1 to 10.70 min.
Pruski P., Correia G.D., Lewis H.V., Capuccini K., Inglese P., Chan D., Brown R.G., Kindinger L., Lee Y.S., Smith A., Marchesi J., McDonald J.A., Cameron S., Alexander-Hardiman K., David A.L., Stock S.J., Norman J.E., Terzidou V., Teoh T.G., Sykes L., Bennett P.R., Takats Z, & MacIntyre D.A. (2021). Direct on-swab metabolic profiling of vaginal microbiome host interactions during pregnancy and preterm birth. Nature Communications, 12, 5967.