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5 protocols using mouse anti phosphohistoneh3

1

Immunofluorescence Staining for Cellular Markers

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Antibody staining on sections and whole mounts was performed as described elsewhere (Sabherwal et al., 2009 (link)). The following primary and secondary antibodies were used: rat anti-HA (Roche), rabbit anti-Flag (Sigma), mouse anti-BrdU (MoBu clone [Life Technologies]), mouse anti-phosphohistoneH3 (Abcam) and rabbit anti-Sox3 (custom made; Zhang et al., 2003 (link)), rabbit anti-MyT1 (custom made; Sabherwal et al., 2009 (link)), Alexa488-coupled anti-mouse, and Alexa647-coupled anti-rabbit (Life Technologies).
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2

Brain Tissue Fixation, Sectioning, and Immunostaining

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Transcardial perfusion with 4% paraformaldehyde (PFA) was performed on the mice for fixation. The brains of E17.5, P0, P2, P4, P7, P14, P30 mice were dissected and post-fixed at 4°C with 4% PFA for 2h to overnight, depending on the size of brains. The brains were dehydrated in 30% sucrose and embedded in OCT compound. Cryosections were cut at 14-μm, or 80-μm thickness with a Cryostat (HM505E, Microm, Germany). Immunostaining was performed with standard protocols: brain sections were incubated overnight with primary antibodies at 4°C and incubated with appropriate fluorescent secondary antibodies for 2h at room temperature. The following primary antibodies were used: Goat anti-GFP (1:1000, Novus Biologicals); Mouse anti-FOXP1 (1:125, Abcam); Rabbit anti-Tbr2 (1:300, Abcam); Rabbit anti-Tbr1 (1:200, Abcam); Mouse anti-Satb2 (1:100, Santa Cruz); Mouse anti-Nestin (1:200, Abcam); Rabbit anti-CDP (1:50, Santa Cruz); Rat anti-Ctip2 (1:500, Abcam); Mouse anti-phospho Histone H3(1:300, Abcam); Mouse anti-β-III-tubulin (1:500, Promega).
Immunofluorescence images were obtained using either Olympus BX41 or Zeiss LSM 710 confocal microscope. The morphology of neurons in the cortex or culture was traced and analyzed using Neurolucida software (MBF Bioscience).
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3

Cerebellum Histological Analysis

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Cerebella were fixed in paraformaldehyde and embedded in paraffin. Sagittal and coronal sections were made with a microtome and subjected to Nissl staining, TUNEL staining and immunohistochemistry. The TUNEL method was carried out using Apoptag Fluorescein In Situ Apoptosis Detection Kit (Sigma-Aldrich, St. Louis, MO). For immunohistochemistry, the following primary antibodies were used in this study: rabbit anti-cleaved Caspase-3 (Cell Signaling Technology, Danvers, MA), rabbit anti-Ki67 (Abcam, Cambridge, UK), rabbit anti-NeuN (Cell Signaling Technology), mouse anti-phospho-histone H3 (Abcam), rabbit anti-GFAP (Proteintech, Rosemont, IL), mouse anti-BrdU (MBL, Tokyo, Japan), mouse anti-p27 (BD Transduction Laboratories, San Jose, CA), mouse anti-Sox2 (Proteintech), and mouse anti-Calbindin-D-28 K (Sigma-Aldrich). Immuno-positive signals were detected using Alexa Fluor 488 and 568-conjugated secondary antibodies (Thermo Fisher Scientific, Waltham, MA). Nuclei were visualized with DAPI, and sections were viewed and images were taken using an LSM700 confocal laser-scanning microscope (Zeiss, Oberkochen, Germany). Images of Nissl-stained sections were taken by a BZ9000 microscope (Keyence, Osaka, Japan).
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4

Immunohistochemical Staining of Drosophila Testes

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Testes were dissected in Ringers solution, then fixed in 4% formaldehyde in Buffer B (75 mM KCl, 25mM NaCl, 3.3mM MgCl2, 16.7mM KPO4) plus 0.1% Triton X-100 for 20 minutes. Testes were washed in PBTx (1X PBS, 0.1% triton X-100), blocked (4% normal donkey serum in PBTx), and stained with primary antibodies overnight at 4°C. Primary antibodies used were mouse anti-fasciclin 3 (1:20, DSHB), goat anti-vasa (1:200, Santa Cruz sc-26877), rabbit anti-vasa (1:200, Santa Cruz, sc-30210), guinea pig anti-Tj (1:10,000, gift from Dorothea Godt [40 (link)]), rabbit anti-zfh1 (1:5000, gift from Ruth Lehmann [41 (link)]), rat anti-Ecadherin (1:20, DSHB), mouse anti-phosphohistone H3 (1:500, AbCam 14955), chicken anti-GFP (1:1000, AbCam 13970), rabbit anti-GFP (Invitrogen A6455) rabbit anti-Phospho-p44/42 MAPK (dpErk) (1:500, Cell Signaling 9101), rabbit anti-phospho4E-BP1 (Cell Signaling 2855) and mouse anti-Eya (1:20, DSHB). Samples were washed in PBTx, then incubated in secondary antibodies for at least 1 hour. All secondary antibodies were from Jackson ImmunoResearch (1:400). Samples were stained with Hoechst 33342 (1 ug/mL), and washed in PBTx. Testes were mounted on slides in 90% glycerol, 1X PBS with 2% N-propyl gallate anti-bleaching agent and stored at −20°.
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5

Comprehensive Larval Brain Staining

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Tissues were dissected from 3rd instar larvae were fixed and stained as ref.53 (link) with minor modifications. After fixation for 20 min in 4% (w/v) paraformaldehyde in PBS, dissected brains from third instar larvae were washed in PBS with 0.1% Triton-X (PBST), then blocked for 2 h in PBST with 5% FCS (blocking solution). Primary antibody staining was done overnight at 4ºC in blocking solution, washed three times with PBST and incubated with secondary antibody in blocking solution for 2 h at room temperature. After three washes in PBST, brains were mounted in Vectasheild mounting media (Vectorlabs). Primary antibodies were as follows: mouse anti-phospho-Histone H3 (Abcam, 1:500); rabbit anti-Laminin (1:1000); guinea-pig anti-Repo (1:1000); rabbit anti-Repo (1:25,000); mouse anti-NimC1 P154 (link)(1:30), mouse anti-Mmp1 (1:1:1 mix of 3A6B4, 3B8D12, 5H7B11 from DSHB diluted 1:10); mouse anti-β–gal (Promega, 1:100); mouse anti-SRF (Active Motif, 1:100). Secondary antibodies were conjugated to Alexa-Fluor 555 or 633 (Invitrogen, 1:500). TO-PRO-3 Iodide (Invitrogen, 1:1000) or DAPI was used to visualise DNA.
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