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5 protocols using ab1423

1

Comprehensive Protein Expression Analysis in Kidney and HK-2 Cells

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A 100× protease inhibitor was added with RIPA lysis buffer (Servicebio) to extract total proteins from kidney and transfected HK-2 cells, and SDS-PAGE isolated 4% to 20%. The proteins were then transferred to PVDF membranes (Millipore) and were blocked in NcmBlot blocking buffer (NCM Biotech) at room temperature for 10 min. Then membranes were incubated overnight with primary antibodies as follows: anti-TRF1 (ab1423, Abcam), anti-γH2AX (ab26350 Abcam), anti-CDK12 (GTX130809, GeneTex), anti-Bcl-2 (3498, Cell Signaling Technology), anti-Bax (89477, Cell Signaling Technology) and anti-cleaved-caspase-3 (9661s, Cell Signaling Technology). Secondary antibodies were used for detection by an ECL advanced system (GE Healthcare). Intensity values expressed as the relative protein expression were normalized to GAPDH (ab2000, Abways). The gray bands were analyzed with ImageJ software (NIH, Bethesda, MD, USA) to compare the expression between targeted proteins and internal controls.
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2

Western Blot Analysis of Adherent and Floating Cells

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Western blot analysis of combined adherent and floating cells was done as we have done before [6 (link)]. Antibodies used against H2AX, γH2AX (phospho-Ser139), PARP1, and actin were the same as previously described [6 (link)]. Also used were antibodies against Tankyrase (mouse monoclonal 19A449; IMGENEX), TRF1 (rabbit polyclonal ab1423; Abcam), and poly(ADP-ribose) chains (mouse monoclonal 3H2844; Santa Cruz).
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3

Immunofluorescence Analysis of Renal Tissues

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Immunofluorescence analysis was performed on 4 μm thick renal tissue sections and HK-2 cells. They were performed with anti-TRF1 (ab1423, Abcam), anti-γH2AX (ab26350), anti-CDK12 (ab246887, Abcam) , AQP1 (ab 9566, Abcam) , LTL (FL-1321-2, Vector Laboratories) and incubated with secondary antibodies (ab150114 and ab150077, Abcam). Under the confocal microscope, 10 fields of view were randomly assigned, and the number of positive tubules and positive cells was counted in a blind manner.
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4

Immunofluorescence Analysis of Telomere Proteins

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Cells grown on glass coverslips were fixed in 4% paraformaldehyde/PBS for 15 min and then permeabilized with 0.1% Triton-X 100/PBS at 37°C for 30 min. Then, the cells were finally blocked with 5% goat serum/PBS at 37°C for 3 h. Immunofluorescence was performed using standard methods, and the slides were incubated alternately with BG4 (40 ng/μl), anti-FLAG antibody (#2368, Cell Signaling Technology), γH2AX antibody (#9718, Cell Signaling Technology; ab26350, Abcam), TRF2 antibody (ab13579, Abcam), TRF1 antibody (ab1423, Abcam) or POT1 antibody (ab21382, Abcam) at 37°C for 3 h. The glass coverslips were washed six times with blocking buffer and were then incubated with the anti-rabbit Alexa 488-conjugated antibody (A21206, Life Technology), the anti-mouse Alexa 555-conjugated antibody (A21427, Life Technology), and 0.5 μg/ml of DAPI (Invitrogen) at 37°C for 3 h. The glass coverslips were again washed six times with blocking buffer, and then, digital images were recorded using a LSM710 microscope (Zeiss, GER) and analyzed with ZEN software. Fifty nuclei were counted in each group.
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5

ChIP Assays for Telomere Protein Analysis

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The ChIP assays were performed according to the manufacturer’s protocol (Upstate Biotechnology, Inc., Lake Placid, NY), with the exception of the conditions for sonication that were changed to five times for 30 seconds each at 10% output. The antibodies used for the immunoprecipitations were anti-TRF2 (ab13579, abcam), anti-TRF1 (ab1423, abcam), anti-POT1 (ab21382, abcam), anti-HA (ab9110, abcam), anti-hist1H2AC (Novus Biologicals), anti-Histone H3.3 (ab62642, abcam) anti-γ-H2AX (pS-139) (ab2893, abcam), anti-ATM (pS-1981) (ab36810, abcam) and anti-XPF (ab17798, abcam). Non-specific rabbit polyclonal antibodies were used as a negative control. After reversing the protein-DNA cross-linking of the immunoprecipitated complexes, DNA was extracted for dot blotting analysis.
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