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22 protocols using ficoll paque premium

1

Peripheral Blood PMNC Isolation and Transplantation

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Peripheral blood samples were collected from donors’ peripheral veins and stored in blood bags with CPDA (citrate phosphate dextrose adenine), carried out in the Asia University Hospital (CMUH 109-REC 1-012), Show Chwan Memorial Hospital (1090803), and Taichung Tzu Chi Hospital (REC 109-45). A 100 ml peripheral blood sample was mixed with 80 ml normal saline (Nang Kuang Pharmaceutical, Tainan, Taiwan) or good manufacturing practice (GMP)-grade MoFi medium (comprising a chemical-defined medium for ex vivo human cells; classified as a medical device; Duogenic StemCells Corporation, Taichung, Taiwan) for 30 min. The mixed blood was then carefully loaded in a set of cell isolation (CS. 900.2, Cytiva, Marlborough, MA, USA) with the Sepax II machine (Cytiva). PBMNCs were separated by density-gradient centrifugation with Ficoll-Paque premium (Cytiva). The isolated PBMNCs were automatically washed with normal saline three times to remove the residue of the MoFi medium and Ficoll-Paque before the cell transplantation. The final concentration of the PBMNCs was adjusted to be 3.5 to 4 ml for one knee/person, containing 7–12 × 107 PBMNCs from 100 ml blood. The cell numbers of engrafted cells were estimated by manual counting using a hemocytometer.
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2

Detecting lymphocyte activation in cardiac transplants

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For the detection of cell activation in vitro, purified CD19+ B cells were cultured for 2 days and incubated with APC-CD25 and PE-CD69 (BD Bioscience) for 30 min at 4 °C in dark.
For the detection of lymphocytes in the model, peripheral blood, fresh cardiac grafts and recipient spleens were obtained on 4 days after cardiac transplantation, before the allo-graft failure. Fresh recipient cardiac grafts were digested in phosphate-buffered saline supplemented with 1% heat-inactivated fetal bovine serum with collagenase 1 and DNase for 60 min at 37 °C, before pressing through a 200 mesh nylon screen. The collected cells were isolated by gradient density centrifugation using ficoll-paque premium (Cytiva, Washington, USA). Collected lymphocytes were stained with fluorescently labeled antibodies. Pacificblue-CD45, PE-CD45R, fluorescein isothiocyanate (FITC)-CD3, APCcy7-CD4, Percp-CD8, PEcy7-CD11b, APC-CD161, FITC-immunoglobulin (Ig)M, and Percpcy5.5-IgG antibodies used for flow cytometry were from BD Biosciences.
Detection was determined by a flow cytometer (CytoFLEX; Beckman Coulter, Fullerton, CA, USA) and data were analyzed by FlowJo (Tree Star, Ashland, OR, USA).
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3

Thiamine Levels and PDH Activity in PBMCs

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Thiamine levels were measured in plasma via liquid chromatography-tandem mass spectrometry by Quest Diagnostics (Nichols Institute, Chantilly, VA, USA). Absolute thiamine deficiency was determined using a previously established standard laboratory reference range from Quest Diagnostics; specifically, absolute thiamine deficiency was defined as a level ≤ 7 nmol/L. If a thiamine level was undetectable (i.e., < 7 nmol/L) a value of 7 nmol/L was imputed.
Peripheral blood mononuclear cells (PBMCs) were isolated from fresh whole blood using a density gradient separation method (Ficoll-Paque premium, GE Healthcare Bio-Science Corp., Piscataway, NJ, USA). PDH activity and quantity were then measured after disruption of the mitochondrial membrane via an immunocapture and microplate-based assay as previously described [38 (link), 39 (link)]. PDH specific activity was calculated as PDH activity/ln (PDH quantity). PDH activity and quantity are expressed in OD/min/mg protein where OD indicates the absorbance (optical density). Post-operative PDH values are expressed as relative to the pre-operative PDH value (i.e., [PDHpost-surgery/PDHpre-surgery] × 100 %).
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4

HTLV-1 infection model in rabbits

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Fourteen-week-old, male, specific pathogen-free New Zealand White (052 CR; 571 OAKWOOD) rabbits were obtained from Charles River Laboratories (Wilmington, MA). After a 2-week acclimatization period, 1 x 107 lethally irradiated (100 Gy) 729.B control cells or 729 HTLV-1 producer cells (wt or mEnhancer) were inoculated into the lateral ear vein. Blood was drawn via the central auricular artery at Weeks 0 (pre-inoculation), 4, 8, 12, 16, 20, and 25 (study endpoint). Plasma was collected and rabbit PBMCs (rPBMCs) were isolated using Ficoll-Paque™ PREMIUM (Cytiva, Marlborough, MA). rPBMCs or plasma were assessed for proviral load, HTLV-1 gene expression, and HTLV-1-specific antibody response, as described below. Sanger sequencing of the viral enhancer region was performed at week 25 to monitor for viral reversions. All animal procedures were performed in accordance with a protocol approved by University Laboratory Animal Resources (ULAR) of The Ohio State University.
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5

PBMC Isolation and RNA Extraction Protocol

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Peripheral blood (2 ml, with EDTA anticoagulant) was collected from patients and matched healthy controls. Ficoll-Paque PREMIUM (Cytiva) was used for the isolation of PBMCs according to the manufacturer's instructions. Total RNA was isolated using TRIzol® (Invitrogen; Thermo Fisher Scientific, Inc.) reagent following standard procedures as previously described (28 (link)). The quality of RNA was determined by measuring the absorbance at 260 nm (A260) and the A280 using a NanoDrop ND-1000 (Thermo Fisher Scientific, Inc.), and RNA integrity was determined based on the RNA integrity number derived from the peak area of 28s RNA, 18s RNA and 5s RNA (RIN ≥7; Agilent 2100 RIN Beta Version Software; Agilent Technologies, Inc.).
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6

Acute Myocardial Infarction Protocol

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We obtained peripheral blood from the patients who visited the emergency department within 6 h after the onset of pain; blood samples from patients with plaque rupture identified by OCT examination were used for subsequent analysis, and patients without AMI detected by CAG examination served as the control group. The whole blood samples were collected in ethylenediaminetetraacetic acid (EDTA) tubes before heparin or any contrast agent was administrated. Peripheral blood mononuclear cells (PBMCs) were isolated from all blood samples within 2 h of collection using Ficoll-Paque PREMIUM (Cytiva) according to the manufacturer's instructions.
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7

Flow Cytometric Analysis of Chicken PBMCs

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A density gradient media 1.084 g/mL (Ficoll-Paque PREMIUM, Cytiva, Marlborough, MA, USA) was used to isolate mononuclear cells from 2 mL of anticoagulated blood obtained at 5 and 12 dpi, according to the manufacturer’s instructions. For each hen, 106 cells of the obtained peripheral blood mononuclear cells (PBMCs) were washed in a PBS containing 1% bovine serum albumin (BSA) (Sigma-Aldrich, Saint Louis, MO, USA) followed by centrifugation at 211 xg for 5 min at 4 °C. The cells were resuspended in 0.2% chicken serum (diluted in 1% BSA) and incubated for 15 min at 4 °C for Fc blocking. After centrifugating the cells as indicated above, the supernatant was discarded and the cell pellets were resuspended in the dark for 20 min at 4 °C using fluorescein isothiocyanate (FITC)-conjugated mouse anti-chicken CD8 (Southern Biotech, Birmingham, AL, USA) and phycoerythrin (PE)-conjugated mouse anti-chicken CD4 (Southern Biotech, Birmingham, AL, USA). The stained PBMCs were washed twice with 1% BSA before being fixed in 1% paraformaldehyde (Electron Microscopy Sciences, Hatfield, PA, USA). The samples were analyzed at the Flow Cytometry Core Facility, University of Calgary (BD LSR II flow cytometer, BD Bioscience, San Jose, CA, USA). Data acquisition was done using BD FACSDiva 6.1.3 software (BD Bioscience, San Jose, CA, USA).
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8

Isolation of PBMCs from Patient Blood

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Peripheral blood mononuclear cells (PBMCs) were isolated from fresh patient-derived EDTA blood. The blood volume was determined and equally diluted for gradient centrifugation with cold RPMI (Gibco, Paisley, GB and Grand Island, NY, USA) without supplements. Diluted blood was then layered carefully on top of 15 mL Ficoll-Paque® PREMIUM (Cytiva, Marlborough, MA, USA) and centrifuged without a brake at room temperature for 18 min. After centrifugation, the upper layer (plasma) was collected and stored at −80 °C. The PBMC layer underneath was carefully removed from the Ficoll layer by using a 1 mL pipette. PBMCs were washed with RPMI two times, counted, and archived in 1 mL Kryo safe medium I (c.c.pro, Oberdorla, Germany) per tube.
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9

Peripheral Blood Mononuclear Cell Isolation

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White blood cell count (WBC) and lymphocyte count of whole blood were analyzed using a hematology analyser XP‐300 (Sysmex). Blood was drawn in lithium‐heparinized tubes and processed within 24 h. The peripheral blood mononuclear cells (PBMC) isolation was performed using a density gradient with SepMate tubes according to manufactures instructions (StemCell). Briefly, the blood was mixed 1:1 with phosphate‐buffered saline (PBS) (Biowest) before being applied to the SepMate tubes containing Ficoll‐Paque premium (Cytiva). The tubes were centrifuged at 1200×g for 10 min at room temperature (RT). The top layer was poured off and washed with PBS following centrifugation at 300×g for 8 min at RT. An additional wash was performed with PBS following the last centrifugation of 200×g for 5 min at RT before frozen down in fetal bovine serum (FBS) (Gibco) with 10% dimethyl sulfoxide (DMSO) (Tocris).
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10

Isolation of PBMCs from Whole Blood

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Human blood samples involved in this study were approved by the Ethics Committee of Chongqing Public Health Medical Center. Informed consent was obtained from all subjects. Immune non-responder and responder HIV-1 infected patients were recruited at the AIDS Outpatient Department of Geleshan Hospital of Chongqing Public Health Medical Center. The blood samples of healthy individuals came from Chongqing Public Health Medical Center (Pingdingshan hospital area). PBMCs were isolated from fresh whole blood in a 15 ml centrifuge tube using Ficoll-Paque PREMIUM (Cytiva, USA, 17544203) according to the manufacturer’s instructions. After mixing the blood sample with sterile PBS in equal volume, the mixture was slowly added to the Ficoll cell separation media and centrifuged 500 × g horizontally for 15 min at room temperature. Cell numbers and viability were measured using a hemocytometer with Trypan blue staining.
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