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13 protocols using glutathione peroxidase

1

AgNO3 Oxidative Stress Assay

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AgNO3, bacterial culture materials, and catalase (CAT) and glutathione peroxidase (GPx) enzymes were purchased from Sigma-Aldrich (St. Louis, MO, USA). Other reagents were purchased from the following companies: LDH Assay Kit (colorimetric) from Abcam (Cambridge, UK); PiBind resin from Expedeon (San Diego, USA); TRIzol reagent from Life Technologies (California, USA); Maxima SYBR Green/Fluorescein qPCR Master Mix and QuantiTects Reverse Transcription Kit from Qiagen (Germantown, USA); and TriFast from Peqlab VWR (Pennsylvania, USA).
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2

Inhibition of NF-κB Pathway in Oxidative Stress

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Dulbecco’s modified Eagle’s medium (DMEM), fetal calf serum (FCS), streptomycin, and penicillin were purchased from Invitrogen (CA, USA). Hydrogen peroxide was obtained from Merck (Darmstadt, Germany). BAY11-7085 (NF-κB inhibitor) was purchased from Calbiochem (Millipore, MA, USA). Glutathione peroxidase, curcumin and human SiRNA of scrambled control and p65, were purchased from Sigma (MO, USA)
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3

Comprehensive Ferroptosis Analysis Protocol

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MEM (Thermo Fisher Scientific, 11095-080), FCS (Gibco, 10437-028), Lysogeny broth (LB) (Sigma-Aldrich, L3152), RSL3 (Selleck Chemicals, S8155), erastin (Selleck Chemicals, S7242), ferrostatin-1 (Sigma-Aldrich, SML0583), Chloroquine (Sigma, C6628), NH4Cl (Sigma, A9434), MG132 (Selleck Chemicals, S2619), P3421 (Selleck Chemicals, S1013), 1400W (Cayman, 81520), L-NIL (Cayman, 80310), BSA (Sigma-Aldrich), DETA-NONOate and DPTA-NONOate (Caymen Chemical), NADPH (Sigma), Glutathione peroxidase (Sigma G6137), Cumene hydroperoxide (Sigma C0524), Thiol fluorescent probe IV (Millipore 595504), Glutathione reductase (Sigma), Glutathione reduced (Sigma G4251), 15-HpETE-PE (Caymen Chemical), Pierce BCA Protein Assay Kit (Thermo Fisher Scientific, 23225), anti- GPx4 (rabbit monoclonal, Abcam, ab125066), anti-Lamp2a (Abcam, ab18528), anti-iNOS (Abcam, ab3523), anti-actin (mouse monoclonal, Sigma-Aldrich, A3854, clone AC-15), secondary antibody, goat anti-rabbit (Sigma-Aldrich, A0545).
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4

Glutathione Peroxidase Activity Assay

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Sample (20 µL, 5 mg/mL of pure DMSO) was mixed with 8 μL of EDTA solution, 10 μL of glutathione reductase (0.2 U Sigma G3664), 4 μL of GSH solution, 10 μL of glutathione peroxidase (0.04 U Sigma G6137), 22 μL of H2O2 and 332 μL of 50 mM sodium phosphate, pH 7.0). To start the reaction, 4 μL of NADPH solution (N5130) was added and the decrease in the absorbance (340 nm) was read after 10 min of incubation at 25 °C. All solutions were prepared in 50 mM buffer and concentrations of reagents in the final mixture were as follows: 1mM EDTA, 0.2 U glutathione reductase, 2 mM GSH, 0.04 U glutathione peroxidase, 1.5 mM H2O2 and 0.8 mM NADPH. Blank sample was prepared with buffer instead of the studied sample and background was measured (mixture containing studied sample and buffer only). One unit of enzyme activity was defined as nMol of NADPH consumed/min·mL sample, in comparison with nMol of NADPH consumed/min in blank (reagent) sample [76 (link)].
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5

Comprehensive Oxidative Stress Analysis

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Thiobarbituric acid (TBA), sodium dodecyl sulfate (SDS), glacial acetic acid, N-butanol, pyridine, 1,3,3-tetraethoxypropane (TEP), cytochrome C, xanthine oxidase, xanthine, glutathione reductase, nicotinamide adenine dinucleotide phosphate (NADPH), hydrogen peroxide, superoxide dismutase, glutathione peroxidase, catalase, acetylthiocholine iodide (ATCI), acetylcholinesterase, 5,5′-dithiobis (2-nitrobenzoic acid) (DTNB), cresyl violet, sodium acetate, sodium carbonate, 2,4,6-tripyridyl-striazine (TPTZ), Folin-Ciocalteu reagent, gallic acid, ascorbic acid, Trizma hydrochloride, potassium chloride, 2,2-diphenyl-1-picrylhydrazyl (DPPH), tris-hydrochloride, and sodium carbonate were purchased from Sigma-Aldrich (St. Louis, MO, USA). Chemicals used in Western blot analysis were purchased from Bio-Rad Laboratories. Methanol and acetic acid (HPLC grade) were purchased from Fisher Scientific.
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6

Oxidative Stress Measurement Protocols

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The following reagents were purchased from Sigma Aldrich (St. Louis, MO, USA): 7-hydroxy-6-methoxycoumarin (scopoletin), curcumin, p-dimethylaminobenzaldehyde, 1,1,3,3-tetraethoxypropane (TEP), chloramines-T, 5,5-dithiobis-2-nitrobenzoic acid (DTNB), reduced glutathione, glutathione reductase (GSH-Rd), glutathione peroxidase (GSH-Px), β-nicotinamide adenine dinucleotide phosphate (β-NADP), and β-NADPH. Perchloric acid was obtained from GFS Chemical Co. (Columbus, OH, USA), thiobarbituric acid (TBA) from Lancaster Co. (Lancashire, England, UK), and hydrogen peroxide from Junsei Chemical Co., Ltd. (Tokyo, Japan).
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7

Biogenic Silver Nanoparticle Synthesis

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Silver nitrate (AgNO3), bacterial culture materials, and the enzymes catalase (CAT) and glutathione peroxidase (GPx) were purchased from Sigma-Aldrich (St. Louis, MO, USA); the LDH Assay Kit (colorimetric) was purchased from Abcam (Cambridge, UK); and PiBind resin was purchased from Expedeon (San Diego, USA). TRIzol reagent was purchased from Life Technologies (California, USA), and Maximas SYBR Green/Fluorescein qPCR Master Mix and the QuantiTects Reverse Transcription Kit were purchased from Qiagen (Germantown, USA). TriFast was purchased from Peqlab VWR (Pennsylvania, USA). Spherical (8.5 to 26.44 nm; mean size 14.9 nm) biogenic SNPs were extracellularly synthesized using Nostoc Bahar M (N-SNPs), characterized and published previously (Fig. 1).13 (link)
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8

Antioxidant Capacity Evaluation Protocol

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1,1-diphenyl-2-picryhydrazyl (DPPH), 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium (MTT), 4-amino-5-methylamino-2’,7’-difluorofluorescein diacetate (DAF-FM DA), 4’,6-diamidino-2- phenylindole dihydrochloride (DAPI), 6-hydroxy-2,5,7,8-tetramethy-chroman-2-carboxylic acid (trolox), 6-hydroxydopamine bromide (6-OHDA), 2’,7’-dichlorofluorescein diacetate (DCFH-DA), acridine orange (AO), ascorbic acid, (+)-catechin, caffeic acid, dimethyl sulfoxide (DMSO), epicatechin, ferrous sulfate heptahydrate, Folic-Ciocalteu’s phenol reagent (FCP), gallic acid, glutathione (GSH), glutathione peroxidase (GPx), glutathione reductase (GR), hydrogen chloride, malodialdehyde (MDA), mangiferin, phosphate buffered saline (PBS), quercetin, sodium molybdate, sodium nitrate, superoxide dismutase (SOD), thiobarbituric acid (TBA), trichloroacetic acid (TCA), vanillic acid, verbascoside, xanthine, and xanthine oxidase (XO) were obtained from Sigma-Aldrich Chemical Co (St. Louis, MO, USA). Hydrogen peroxide (H2O2) and all HPLC-grade solvents were acquired from Merck (Darmstadt, Germany). Dulbecco’s modified Eagles medium (DMEM) and fetal bovine serum (FBS) were purchased from Gibco (Grand Island, NY, USA). Double distilled water was used throughout the experiments.
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9

Glutathione Peroxidase Activity Assay

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Glutathione peroxidase (GPx, EC 1.11.1.9) activity was evaluated by the decrease of NADPH (Sigma Chemical Co., St. Louis, MO, USA) concentration at 340 nm. The reaction medium contained 100 mM potassium phosphate buffer (Sigma Chemical Co., St. Louis, MO, USA), pH 7.7, 1 mM EDTA (Sigma Chemical Co., St. Louis, MO, USA), 2 mM reduced glutathione (Sigma Chemical Co., St. Louis, MO, USA), 0.15 U/mL glutathione reductase (Sigma Chemical Co., St. Louis, MO, USA), 0.4 mM azide (Sigma Chemical Co., St. Louis, MO, USA), 0.1 mM NADPH, and 0.5 mM tert-butyl hydroperoxide (Sigma Chemical Co., St. Louis, MO, USA) as enzyme substrate. GPx unit is defined as 1 µmol of NADPH consumed per minute and the specific activity as units/mg protein [42 (link)].
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10

Quantifying Glutathione Redox Status

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GSH and GSSG levels were measured as previously described (21 (link)). GSH and GSSG levels were determined as the difference in low molecular weight thiols. BAL fluid, cell lysates, or apical culture supernatants were incubated with glutathione peroxidase (Sigma-Aldrich, G6137), cumene hydroperoxide (Sigma-Aldrich, 247502), glutathione reductase (Sigma-Aldrich, G9297), and NADPH (Sigma-Aldrich, N1630) for 30 minutes at 25°C. Thiol Fluorescent Probe IV (10 mM; Sigma-Aldrich, 1173888-41-9) was then used to identify the low molecular weight thiols, with fluorescence measured at 400 nm excitation and 465 nm emission. A standard curve was established by the addition of GSH to PBS. Intracellular GSH and GSSG levels were corrected for intracellular protein, determined by Pierce BCA Protein Assay Kit (Thermo Fisher Scientific, 23225) using albumin as a standard. The lower limit of detection for this assay was 0.016 μM or 0.13 nmol/mg protein.
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