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3 protocols using cpg 2006

1

Immune Response Signaling Pathway Modulation

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The TLR agonists Pam3Cys, polyI:C, LPS, flagellin, and R848 were purchased from Invivogen (San Diego, CA, USA); CpG-2006 and CpG-1826 from Invitrogen (Carlsbad, CA, USA) or Genomics Biosci & Tech (New Taipei, Taiwan); BMS-345541, collagenase II, collagenase IV, deoxyribonuclease, and anti-Flag M2 antibody from Sigma-Aldrich Co. (St. Louis, MO, USA); and HA.11, PE-anti-human CD117, PE- anti-mouse CD117, and PE-rat IgG2b κ isotype control antibody from BioLegend (San Diego, CA, USA); PE-anti-human CD133 antibody from Miltenyi Biotec (Bergisch Gladbach, Germany); PE-anti-mouse CD11b antibody from eBioscience (San Diego, CA, USA); anti-phospho-RelA (Alexa Fluor 647 conjugate) and rabbit IgG isotype control antibody from Cell Signaling (Beverley, MA, USA). The miR-205 mimics and control were synthesized by GeneDirex (Gueishan Township, Taiwan). Antibodies against human and mouse COMMD1 were purchased from Abnova (Taipei, Taiwan) and Proteintech (Chicago, IL, USA), respectively; human recombinant TNF-α, IL-1β, epidermal growth factor (EGF), and basic fibroblast growth factor (bFGF) from Peprotech (Rocky Hill, NJ, USA); and reagents for luciferase assay, from Promega (Medison, WI, USA).
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2

Naïve B cell differentiation protocol

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Purified naïve B cells were cultured in B-cell medium (RPMI 1640 containing L-glutamine; Invitrogen Life Technologies, CA, USA), supplemented with 10% fetal calf serum (FCS) (Invitrogen Life Technologies, Waltham, MA, USA), 10 mM 4-(2-hydroxyethyl)-1-piperazineethansulfonic acid (HEPES) (pH 7.4; Sigma-Aldrich, St Louis, MO, USA), 0.1 mM nonessential amino acid solution (Sigma-Aldrich), 1 mM sodium pyruvate (Invitrogen Life Technologies), 60 mg ml−1 penicillin, 100 mg ml−1 streptomycin, 40 mg ml−1 transferrin (Sigma-Aldrich), and 20 μg ml−1 Normocin (InVivogen, San Diego, CA, USA); and stimulated with 100 ng ml−1 CD40L alone (Enzo, Farmingdale, NY, USA) or with IL-4 (100 ng ml−1), IL-21 (50 ng ml−1; both Peprotech), or CpG 2006 (1 μg ml−1, Invitrogen, Carlsbad, CA, USA), APRIL (500 ng ml−1, Adipogen, San Diego, CA, USA), in the presence or absence of IL-4 and IL-21. For some experiments, B cells were labelled with division-tracking dye cell trace violet (CTV, Invitrogen).32 (link) For phenotypic and functional analysis, cells were cultured in 96-well plates for 5 or 6 days, collected, stained with CD20, CD27, CD38, IgG, IgM, IgA and the proportion of isotype switched and differentiated antibody secreting cells determined as previously described.6 (link) Secreted IgM, IgG and IgA levels were determined by Ig Heavy chain-specific immunoassays as previously described.6 (link)
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3

Immune Cell Activation Reagents

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Thiostrepton and azithromycin were purchased from Sigma-Aldrich (St. Louis, MO, USA). TLR ligands, including Pam3Cys, polyinosinic-polycytidylic acid (polyI:C), LPS, and R848, were purchased from InvivoGen (San Diego, CA, USA). CpG-2006 was purchased from Invitrogen (Carlsbad, CA, USA) or Genomics BioSci & Tech (New Taipei City, Taiwan). LL37 was purchased from GeneDireX (Gueishan Township, Taiwan). Human recombinant IFN-γ and IL-4 were purchased from PeproTech (Rocky Hill, NJ, USA).
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