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Alexa fluor 647 donkey anti rabbit

Manufactured by Abcam
Sourced in United States

Alexa Fluor 647 donkey anti-rabbit is a secondary antibody conjugate designed for use in immunofluorescence applications. It is a donkey-derived polyclonal antibody that specifically binds to rabbit primary antibodies. The antibody is conjugated to the Alexa Fluor 647 fluorescent dye, which has excitation and emission maxima of approximately 650 nm and 665 nm, respectively.

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5 protocols using alexa fluor 647 donkey anti rabbit

1

Validating CRH-eGFP Expression in Transgenic Mice

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To confirm that eGFP was expressed in CRH neurons in the CRH-eGFP transgenic mice, immunohistochemistry was performed on brains of four 5-week-old CRH-eGFP mice. Each mouse received an intracerebroventricular stereotaxic injection of colchicine (20 μg in 2 μL saline, Cayman Chemical Company) into the lateral ventricle under isoflurane anesthesia 24 h before sacrifice. Mice were then anesthetized with ketamine/xylazine and transcardially perfused with ice-cold phosphate buffered saline (PBS) followed by 4% paraformaldehyde (PFA) in phosphate-buffered saline (PBS). Brains were dissected from the cranium and post-fixed with 4% PFA at 4°C overnight and then submerged in 30% sucrose/4% PFA/PBS. Forty μm-thick coronal sections of the hypothalamus containing the PVN were cut on a freezing microtome. The sections were pre-incubated in a blocking solution containing 1.5% BSA and 0.4% Triton X-100 in PBS for 1 h and then incubated with rabbit anti-human/rat CRF primary antibody (1:20,000, #PBL rC68; RRID:AB_2650435, Salk Institute for Biological Studies) at 4°C overnight followed by incubation in a secondary antibody Alexa Fluor 647 donkey anti-rabbit (1:500, Abcam) at room temperature for 1 h. Sections were mounted on glass slides, coverslipped, and imaged on a laser scanning confocal microscope (Nikon A1).
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2

Immunohistochemical Detection of MCT8 in Retinal Tissue

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For the detection of MCT8 protein we used a commercial rabbit polyclonal IgG (HPA003353, Sigma-Aldrich, Taufkirchen, Germany; dilution Western Blot 1:1000, immunohistochemistry 1:500). For Western blotting, we used a rabbit polyclonal H3 IgG (ab1791, Abcam, Cambridge, UK; dilution 1:5000) as internal loading control. A horseradish peroxidase-conjugated swine anti-rabbit IgG (P0217, Dako, Hamburg, Germany; dilution 1:10000) was used as a secondary antibody. For immunohistological analyses, we labeled S-opsin with a goat polyclonal IgG (sc-14363, Santa Cruz Biotechnology, Dallas, TX, USA; dilution: 1:500), and Glucose transporter 1 (GLUT1) with a mouse monoclonal antibody (ab40084, Abcam; dilution 1:100), to enable a better localization of MCT8 immunostaining in retinal cryosections. To visualize MCT8, GLUT1, and S-opsin in each section, sections were incubated with a mixture of the three primary antibodies, and three secondary antibodies with well separated excitation and emission spectra were chosen. Binding sites of the anti-MCT8 antibody were revealed by Alexa Fluor 647 donkey anti-rabbit (false colored in red), anti-S-opsin by Alexa Fluor 568 donkey anti-goat (false colored in cyan), and anti-GLUT1 antibodies by Alexa Fluor 488 donkey anti-mouse (false colored in green), at a dilution of 1:500 (Abcam).
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3

Whole-Brain Immunohistochemistry Protocol

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Brains were washed in 0.2% Triton X-100 (Sigma T8787) in PBS, followed by 20% DMSO (Fisher Scientific D128) + 0.3 M glycine (Sigma 410225) + 0.2% Triton X-100 in PBS at 37°C for 2 d. Brains were then washed in 10% DMSO + 6% normal donkey serum (NDS; EMD Millipore S30) + 0.2% Triton X-100 in PBS at 37°C for 2–3 d to block non-specific antibody binding. Brains were then twice washed for 1 h at 37°C in 0.2% Tween-20 (Sigma P9416) + 10 mg/ml heparin in PBS (PTwH solution) followed by incubation with primary antibody solution (rabbit anti-Fos, 1:1000; Synaptic Systems 226008) in 5% DMSO + 3% NDS + PTwH at 37°C for 7 d. Brains were then washed in PTwH 6× for increasing durations (10 min, 15 min, 30 min, 1 h, 2 h, overnight) followed by incubation with secondary antibody solution (Alexa Fluor 647 donkey anti-rabbit, 1:200; Abcam ab150075) in 3% NDS + PTwH at 37°C for 7 d. Brains were then washed in PTwH 6× for increasing durations again (10 min, 15 min, 30 min, 1 h, 2 h, overnight).
CGRP stim timepoint samples also received primary (chicken anti-GFP, 1:500; Aves GFP-1020) and secondary (Alexa Fluor 594 donkey anti-chicken, 1:500; Jackson Immuno 703-585-155) antibodies for ChR2-YFP immunolabeling during the above protocol.
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4

Immunofluorescent Analysis of LC3A/B

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Cells were immobilized with 4% paraformaldehyde and permeabilized with 1% triton X-100 for 10 min, followed by blocking with 2% bovine serum albumin for 30 minutes. Then, the primary antibody, rabbit polyclonal antibody (LC3A/B, 50 μg/50 μl, AF5402, anti-LC3A/B antibody, 1 : 100, Affinity, USA), was used for incubation overnight at 4°C. Then, cells were incubated with a secondary antibody Alexa Fluor 647 donkey anti-rabbit (ab150075, 1 : 200, Abcam, USA) away from light for 1 hour. After that, cells were mounted with DAPI (1 : 1000, 32670-5MG-F, Sigma, USA) for 5 minutes. Immunofluorescent images were captured and analyzed with a confocal microscope (Olympus, FV10-ASW3.1, JPN).
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5

Spinal Cord Immune Cell Profiling

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Spinal cord sections were blocked with a blocking solution containing 5% non-fat milk powder, 1% bovine serum albumin and 0.3% Triton-X100 in 0.1 M PBS (all Sigma-Aldrich, USA) for 1 h at room temperature. The following primary antibodies, diluted in the same blocking solution, were then added and incubated at 4 °C overnight: Anti-Iba1 (1:200; Novus Biologicals, USA) for macrophages, anti-iNOS (1:100; Abcam, USA) for M1-macrophages, anti-CD206(1:200; Bio-Rad, Germany) for M2-macrophages, anti-TMEM119 (1:200; Abcam, USA) for microglia, anti-CD3 (1:200; Bio-Rad, Germany) for T-Lymphocytes and anti-GFAP (1:250; Abcam, USA) for astrocytes. Isotype controls with non-specific immunoglobulin at the same concentration were performed to ensure the specificity of the antibodies (data not shown).
As secondary antibodies, Alexa Fluor 405 donkey antigoat (1:400; Abcam, USA), Alexa Fluor 557 donkey antimouse (1:400; R&D Systems, USA) and Alexa Fluor 647 donkey anti-rabbit (1:400; Abcam, USA), diluted in blocking solution without Triton-X100, were used and applied for 1 h at room temperature before covering the sections with mounting medium.
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