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9 protocols using anti xct

1

Western Blot Analysis of Brain Tissue

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Brain tissues and isolated primary microglia were lysed in SDS sample buffer (50 mM Tris–HCl, pH 6.8, 2% SDS, 10% glycerol, 1 mM phenylmethylsulfonyl fluoride, and 2 mM ethylenediaminetetraacetic acid). Lysates were subjected to SDS-PAGE and then transferred onto a PVDF membranes (Hybond-P; GE Healthcare). The membrane was blocked with a 3% skim milk/PBS-Tween 0.5% (PBST) solution. The blot was then placed in the PBST solution containing anti-xCT (Abcam, Cambridge, UK), anti-Iba-1 (Abcam), anti-connexin 43 (BD Transduction Laboratories, Lexington, UK) or anti-β-actin (Cell Signaling Technology, Danvers, MA). Immunoreactive signal was detected using HRP-linked anti-rabbit or mouse IgG and ECL detection reagents (GE Healthcare) following the manufacturer’s specifications. The protein content of each sample was measured using the bicinchoninic acid (BCA) protein assay system (Thermo Fisher Scientific). The density of the immunoblot signal was semi-quantified using Image J software (National Institutes of Health, Bethesda, MD).
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2

Homocysteine-Induced Ferroptosis Mechanism

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DL-homocysteine (Hcy, H4628) was purchased from Sigma–Aldrich (St. Louis, MO, USA). Rituximab (RTX, 10 mg/ml), a monoclonal anti-human CD20 antibody, was purchased from Roche (Basel, Switzerland). Ferrostatin-1 (Fer-1, S7243) and liproxstatin-1 (lip-1, S7699) were purchased from Selleckchem (Houston, TX, USA). The following antibodies were used in this work. Anti-β2GPI (bs-1570R) was purchased from Bioss Inc. (Beijing, China). Anti-CBS (cystathionine β-synthase, 14787-1-AP) and anti-CSE (cystathionine γ-lyase, 12217-1-AP) were purchased from Proteintech (Rosemont, IL, USA). Anti-CD31 (sc-18916), anti-nephrin (sc-377246) and anti-PDGFRβ (platelet-derived growth factor receptor beta, sc-374573) were purchased from Santa Cruz Biotech (CA, USA). Anti-4-HNE (4-hydroxynonenal, MAB3249) was purchased from R&D Systems (MN, USA). Anti-xCT (catalytic subunit of cystine/glutamate antiporter System Xc-, also called SLC7A11, ab37185), anti-LOX15 (Lipoxygenase 15, ab23691), anti-GPX4 (glutathione peroxidase 4, ab125066), and anti-TFR (transferrin receptor, ab214039) were purchased from Abcam (Cambridge, MA, USA). Anti-TF (transferrin, A1448), anti-SLC40A1 (A14884), anti-β-actin (AC038), HRP-conjugated goat anti-rabbit (AS014), and HRP-conjugated goat anti-mouse (AS003) were purchased from ABclonal (Wuhan, China).
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3

Comprehensive Immunoblotting Antibody Panel

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Anti-Gpx4 (Abcam, ab41787, 1:2000), Anti-xCT (Abcam, ab37185, 1:2000), Anti-Cas9 (Cell signaling, 14697, 1:1000,), Anti-ß-Actin (Sigma, A1978, 1:10,000), Anti-GCLC (Santa Cruz, sc-166345, 1:1000), Anti-Ascl1 (BD Pharmingen, 556604, 1:1000), Anti-Txnrd1 (Cell signaling, 15140S, 1:1000), Anti-Txnrd2 (Cell signaling, 12029, 1:1000), Anti-Acsl4 (Santa Cruz Biotechnology, sc-271800, 1:2000), Anti-Txn1 (Cell signaling, 2429S, 1:1000), Anti-GAPDH (Cell signaling, 97166S, 1:2000), Anti-FSP1 (previously described55 , kindly provided by M. Conrad, undiluted hybridoma supernatant), Anti-REST1 (ThermoFisher, BS-2590R, 1:1000), Anti-REST1 (Abcam, ab21635, 1:1000), Anti-TXNIP (Cell signaling, 14715S, 1:1000), Anti-CD71 (Santa Cruz, sc-65882, 1:2000), Anti-cMyc (Abcam, ab32072, 1:2000), Anti- NCAM (Invitrogen, PA5-79717, 1:1000), Anti-Vimentin (Abcam, ab137321, 1:1000), Anti-YAP1 (Cell signaling, #4912, 1:1000), Anti-Synatophysin (Invitrogen, MA5-14532, 1:1000), Anti-AGPAT2 (Thermo Fisher, PA5-76010, 1:2000), Anti-AGPAT3 (Thermo Fisher, PA5-101343, 1:2000). HRP-conjugated secondary antibodies: goat-anti-mouse-HRP (Linaris GmBH, 20400-1 mg, 1:10,000), goat-anti-rabbit-HRP (Linaris GmBH, 20402-1 mg, 1:10,000), goat-anti-rat-HRP (Sigma, A9037-1 ml, 1:10,000).
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4

Western Blot Protein Analysis Protocol

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Total protein was extracted using a bicinchoninic acid (BCA) assay kit by lysing cell precipitates with RIPA lysis buffer for 10–20 min on ice or at 4°C, followed by centrifugation at 12 000 × g for 15 min at 4°C. The protein lysate was diluted in 5X loading buffer and denatured by boiling at 100°C for 5–10 min. Protein samples (60 μg) were separated by sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene difluoride (PVDF) membrane by membrane transfer on ice at 250 mA. They were blocked with 5% nonfat milk for 1–2 h followed by incubation with primary antibodies overnight at 4°C in an orbital shaker. The membrane was incubated with goat anti-rabbit or anti-mouse IgG secondary antibody for 1–2 h at 4°C on an orbital shaker after primary antibody was washed off. Finally, the membrane was visualized with a chemiluminescence imager and exposed to the enhanced chemiluminescence (ECL) dye solution.
Primary antibodies used included: anti-SQLE (Proteintech, Cat# 12544–1-AP), anti-β-actin (BIOX, Cat# BX-009), anti-caspase 3 (CST, Cat# 9662S), anti-cleaved caspase 3 (CST, Cat# 9664T), anti-caspase 9 (Proteintech, Cat# 10380–1-AP), anti-GPX4 (CST, Cat# 52455S), anti-xCT (abcam, ab175186), anti-Bcl2 (CST, Cat# 15071T), and anti-BAX (CST, Cat# 5023T).
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5

MTT Assay for Ferroptosis Analysis

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3‐(4,5‐dimethylthiazol‐2‐yl)‐2,5‐di‐phenyltetrazolium bromide (MTT) was purchased from Sigma-Aldrich (St. Louis, MO, USA). Deferoxamine was purchased from Abcam (Cambridge, MA, USA). Ferrostatin-1 and erastin were purchased from MedChemExpress (Princeton, NJ, USA). The following antibodies were used: anti-β-actin, anti-p53 (Proteintech, Chicago, IL, USA); anti-GPX4, anti-xCT, anti-TF, anti-TFR (Abcam, Cambridge, MA, USA).
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6

Western Blot Analysis of Mouse Liver Proteins

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Protein samples (20 µg) of mouse liver were applied to 8% to 12% SDS-PAGE for electrophoretic separation and immunoblotting. The following were the primary antibodies used in the Western blot assay: anti-p-HSL (#4126; Cell Signaling Technology, Danvers, MA, USA), anti-HSL (#4107, Cell Signaling Technology), anti-PGC1α (#54481, Abcam, Cambridge, UK), anti-PPARγ (#7273, Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-C/EBPα (#8178, Cell Signaling Technology), anti- PLIN2 (#108323, Abcam), anti-PCK1 (#70358, Abcam), anti-G6Pc (#83690, Abcam), anti-IRβ (#3025, Cell Signaling Technology), anti-IRS-1 (#3407, Cell Signaling Technology), anti-PI3K (#4257, Cell Signaling Technology), anti-p-AKT (#9271, Cell Signaling Technology), anti-AKT (#9272, Cell Signaling Technology), anti-CAT (#ER40125, HuaBio, Hangzhou, China), anti-SOD2 (#ET1701-54, HuaBio), anti-COX2 (#12282, Cell Signaling Technology), anti-GPX4 (#125066, Abcam), anti-FtH (#81444, Abcam), anti-xCT (#37185, Abcam), and anti-β-actin (#8457, Cell Signaling Technology). Peroxidase-conjugated goat anti-rabbit IgG (BL003A, Biosharp, Hefei, China) and goat anti-mouse IgG (BL001A, Biosharp) were applied as secondary antibodies.
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7

Purified erianin modulates glutaminolysis

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Purified erianin (>98%) (Cat: B20844) was gained from Shanghai Yuanye Biological Co., Ltd. All antibody follow-up experiments used were anti-xCT (Cat: ab175186), anti-Glutaminase (Cat: ab93424), anti-GPX4 (Cat: ab125066), anti-Heme Oxygenase-1 (Cat: ab189491) were from Abcam (Cambridge, United Kingdom), anti-FTH1 (Cat: 4393S), anti-NRF2 (Cat:12721S), anti-GAPDH (Cat: 5174S) were provided by Cell Signaling Technology (Danvers, United States). And inhibitors mentioned in experiments were deferoxamine (Cat: S5742) (Selleck, Houston, United States), chloroquine (Cat: C6628) (Sigma-Aldrich, St. Louis, United States), Z-VAD-FMK (Cat: HY-16658B), N-Acetylcysteine (Cat: HY-B0215), necrostatin-1 (Cat: HY-15760), L-Glutathione reduced (Cat: HY-D0187), TBHQ (Cat:HY-100489) were obtained from MedChem Express (New Jersey, United States), pLVX-U6-NRF2-shRNA1-PGK-EGFP-E2A-Puro (Cat:p24452) (miaolingbio, Wuhan, China).
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8

Cellular Stress Response Regulation

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Dulbecco's modified Eagle's Ham/F12 medium (DMEM/F12), trypsin/EDTA, fetal bovine serum (FBS), trypsin/EDTA, antibiotics solution, and sterile phosphate buffer saline were purchased from Invitrogen (Carlsbad, CA). Cell culture dishes were obtained from Corning Inc. (Corning, NY). Taurine, epidermal growth factor (EGF), insulin, hydrocortisone, and other chemicals were supplied by Sigma‐Aldrich (St. Louis, MO). Nrf2 small‐interfering RNA (siRNA) and a negative control (NC) siRNA were designed and synthesized by Genepharma (Shanghai, China). p38 MAPK inhibitor (U0126), JNK inhibitor (Sp600125), and ERK1/2 inhibitor (SB203580) were obtained from Sigma‐Aldrich. The following antibodies were employed in this study: anti‐GRP78, anti‐CHOP, anti‐Nrf2, anti‐HO‐1, anti‐NQO‐1, anti‐Xct, and anti‐Txnrd1 antibodies were purchased from Abcam (Cambridge, UK); anti‐JNK, anti‐P‐JNK anti‐ERK, anti‐P‐ERK, anti‐p38, and anti‐P‐p38 antibodies were purchased from Cell Signaling Technology (Beverly, MA); and anti‐β‐actin antibody was obtained from Amyjet Scientific (Wuhan, China).
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9

Protein Expression Analysis of Heart Tissue

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The collected mice hearts and NRCs were lysed in radioimmunoprecipitation assay (RIPA) buffer. Bicinchoninic acid protein assay kits (Thermo Scientific) were used to measure the protein concentrations. Protein was isolated by Sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS‐PAGE) and then transferred into a polyvinylidene fluoride membrane and incubated at room temperature for 2 h with a 5% non‐fat milk-blocking buffer. Afterward, membranes were incubated with the primary antibodies at 4°C overnight, including anti-Clearved Caspase-3 (1:1000; cat#: 9664, Cell Signaling Technology), anti-RIPK3 (1:1000; cat#: 10188, Cell Signaling Technology), anti-LC3 I/II (1:1000; cat#: 4108, Cell Signaling Technology), anti‐Gpx4 (1:1000; cat#: 59735, Cell Signaling Technology), anti‐xCT (1:1000; cat#: ab300667, Abcam), anti‐FTH (1:1000; cat#: 4393, Cell Signaling Technology), anti‐Nrf2 (1:1000; cat#: ab62352, Abcam), and anti‐β actin (1:10000, cat#: 4970, Cell Signaling Technology). The membranes were incubated at room temperature for 2 h with secondary antibodies (1:10000, Boster, Shanghai, China) and visualized by ECL kits (Engreen, Beijing, China). The protein expression was quantified by ImageJ software and was normalized to control.
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