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Dna plantzol reagent

Manufactured by Thermo Fisher Scientific
Sourced in United States

DNA Plantzol Reagent is a solution designed for the extraction and purification of DNA from plant samples. It is a core component in the DNA extraction process, facilitating the lysis of plant cells and the release of genetic material.

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6 protocols using dna plantzol reagent

1

Amana Species Genomic Sequencing

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Fresh leaf samples of six Amana species, five from China and one from Japan (Table 1), were field-collected and dried with silica gel. Voucher herbarium specimens were deposited at the Herbarium of Zhejiang University (HZU). We extracted total DNA from ca. 3 mg of the silica-gel dried leaf tissue for each species using DNA Plantzol Reagent (Invitrogen) and following the manufacturer's protocol. The qualities and quantities of genomic DNA were checked on an Agilent BioAnalyzer 2100 (Agilent Technologies). Short-insert (500 bp) paired-end libraries were generated by using Genomic DNA Sample Prep Kit (Illumina) according to the manufacturer's protocol. Genomic DNA of each species was indexed by barcode tags and then pooled together for sequencing in one lane of HiSeq™ 2500 (Illumina, San Diego, California, USA) at Beijing Genomics Institute (BGI, Shenzhen, China).
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2

DNA Extraction from Silica-Dried Leaves

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Fresh leaves of C. giganteum from Sichuan Province (China), C. cathayanum from Zhejiang Province (China), and C. cordatum from the Miyazaki Prefecture (Japan) were sampled and dried with silica gel. Voucher specimens were deposited in the Herbarium of Zhejiang University (HZU). Genomic DNA was extracted from approximately 3 mg of the silica-dried leaf tissue using DNA Plantzol Reagent (Invitrogen) according to the manufacturer's protocol. The quality and concentration of the DNA products were assessed using agarose gel electrophoresis and an Agilent BioAnalyzer 2100 (Agilent Technologies).
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3

Plastome Sequencing of Nandinoideae

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For whole plastome sequencing, we collected fresh leaves of 13 Nandinoideae species, including 10 of Gymnospermium, one of Leontice, and two of Caulophyllum, resulting in 20 individuals overall (1–2 individuals per species, see Supplementary Table 1). Voucher specimens were deposited at the herbarium of Tarim University (TARU), Alar, Xinjiang, China (Table 1). Total genomic DNA was extracted from the silica-gel dried leaf tissues using DNA Plantzol Reagent (Invitrogen, Carlsbad, CA, United States), following the manufacturer’s protocol. The quality and quantity of genomic DNA was determined using both 1% agarose gel electrophoresis and an ultraviolet spectrophotometer (K5800, KAIAO, Beijing, China).
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4

Genetic Diversity of Wild and Cultivated Coptis yanhusuo

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According to the Flora of China (http://www.efloras.org/index.aspx), C. yanhusuo has two synonyms: C. turtschaninovii Besser f. yanhusuo Y. H. Chou & C. C. Hsu and C. tertici (Nakai) Nakai f. yanhusuo (Y. H. Chou & C. C. Hsu) Y. C. Zhu. In this study, we collected leaves of approximately 15 to 20 individuals of wild C. yanhusuo from the 11 known natural populations (Figure 1; Table 1). The distances between neighboring plants exceeded 15 m. In addition, we obtained leaves and rhizomes from 14 to 20 individuals of C. yanhusuo from 6 cultivated populations representing the major C. yanhusuo-producing regions in China (CG, GZ, HQ, HZ, JS, and QX; Figure 1, Table 1). Leaf tissues were ground in liquid nitrogen, and genomic DNA was extracted using DNA Plantzol Reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s protocol. The rhizomes from cultivated populations were dried at 60° C to a constant weight and prepared for alkaloid analysis.
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5

Genomic Sampling of Heterostyly Plant

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We collected a total of 160 H. chrysotricha individuals from eight islands and eight adjacent mainland populations in the TIL region, and 110 individuals from seven islands and four adjacent mainland populations in the ZA region (Table 1 and Table 2; Figure 5). In each population, almost equal numbers of individuals with long-styled (L-morph) or short-styled (S-morph) flowers were collected separately. We extracted the total genomic DNA from the dry leaf material of each sample using DNA Plantzol Reagent (Invitrogen, Carlsbad, CA, USA), following the manufacturer’s protocol. We then checked the quality of the DNA using 1% agarose gel electrophoresis and measured the DNA concentration using a NanoDrop 2000 spectrophotometer (Thermo Scientific, Wilmington, DE, USA). Finally, 256 of the 270 DNA samples met the minimum quality requirements and were retained for subsequent sequencing and genotyping.
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6

Menispermum and Sinomenium DNA Extraction

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Fresh leaves from three Menispermum species and Sinomenium acutum were collected and then dried in silica-gel. In total twelve samples of M. canadense, four of M. dauricum, and one Sinomenium acutum were included. Voucher specimens were mostly deposited at the Herbarium of Zhejiang University (HZU), with the two M. mexicanum specimens (one of which is an isotype specimen) were sampled from the Gray Herbarium (GH) and Arnold Arboretum Herbarium (A) of Harvard University (Table 1). Total genomic DNA was extracted using DNA Plantzol Reagent (Invitrogen, Carlsbad, CA, United States) according to the manufacturer’s protocol. Agarose gel electrophoresis and an ultraviolet spectrophotometer (K5800, KAIAO, Beijing, China) were used to check the quality and quantity of genomic DNA, respectively.
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