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20 protocols using recombinant human scf

1

Enrichment and Culture of Human Mast Cells

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Peripheral blood progenitor cells were enriched from PBMCs with EasySep Human Progenitor Cell Enrichment Kit (Stemcell Technologies, Vancouver, BC, Canada) and cultured in StemPro-34 Medium (Invitrogen, Waltham, Mass) supplemented with 100 ng/mL human recombinant SCF and 100 ng/mL human IL-6 (R&D Systems, Minneapolis, Minn). Human IL-3 (PeproTech, Rocky Hill, NJ) was added (IL-3 culture) or not (no IL-3 culture) on day 0 at 30 ng/mL.16 (link) By 7 weeks, with or without IL-3, more than 98% of the cells were MCs, identified as FcεRI/CD117 double-positive, granular cells. The huMC lines LAD219 (link) and HMC1.220 (link) were cultured as described.
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2

Colon Muscularis Cell Culture

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The cells of colon muscularis from adult normal colon (n = 3) or HSCR samples (n = 3) were cultured (6×105 cells per well) in Medium 199 containing 10% FBS, penicillin (100 U/ml) and streptomycin (100 mg/ml), with or without supplement with human recombinant SCF (50 ng/ml, R&D system), human recombinant IGF-I (100 ng/ml, R&D system), at 37°C in a humidified atmosphere of 5% CO2 in air. The medium was replaced at 2-day intervals.
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3

Cytokine-Modulated Expansion of Human Fetal CD34+ Cells

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CD34+ cells were isolated from human fetal liver tissues. Then the cells were cultured in StemSpan SFEM medium (Stem Cell Technologies) with heparin (10 μg/ml, Sigma), recombinant human SCF (20 ng/ml, R&D), thrombopoietin (40 ng/ml, Cell Sciences) and CHIR99021 (GSK3 inhibitor, 250 nM, STEMGENT) for 48 hours in the presence of IFN-α or IFN-β at the dose of 20 IU/ml and 200 IU/ml, respectively. The cells were counted and collected for the detection of CD38 expression on HPCs.
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4

Human MC Line LAD2 Culture Protocol

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The human MC line LAD2 was a gift from Dr. A. S. Kirshenbaum (National Institutes of Health, Bethesda, MD) [16 (link)]. Cells were cultured at 37 °C in 5% CO2 and passaged weekly to maintain a 500,000 cells/mL density. Dedicated medium consisted of StemPro-34 serum-free medium (Gibco) supplemented with StemPro-34 Nutrient Supplement (Gibco), 2 mM l-glutamine (Sigma-Aldrich), 100 U/mL penicillin/100 μg/mL streptomycin (Gibco), and 100 ng/mL recombinant human SCF (R&D Systems).
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5

Culturing the LAD2 Mast Cell Line

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LAD2 cell line was kindly provided by Dr. Kirshenbaum of the National Institutes of Health (Bethesda, MD, USA). LAD2 cells were cultured in StemPro-34 SFM (Thermo Fisher Scientific, MA, USA) with StemPro-34 nutrient supplement (2.5%, Thermo Fisher Scientific, MA, USA), l-glutamine (2 mM, Gibco, CA, USA), penicillin/streptomycin (1%, Hyclone, UT, USA), and recombinant human SCF (100 ng/mL, R&D Systems, MN, USA). Half of the medium was replaced weekly by adding an equal volume of fresh medium containing SCF. The cell density was maintained at 2–5 × 105 cells/mL. The cells were incubated at 37 °C in 5% CO2 incubator.
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6

Human Mast Cell Lines: HMC-1 and LAD2

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The HMC-1(5C6) and LAD2 cells were established at 1996 by Dr. BM Henz [21 (link)] and at 2003 by Dr. AS Kirshenbaum [22 ] separately, since than used widely as human mast cell line.
The HMC-1(5C6) cell line was kindly provided by Dr. T Zuberbier (Universitatsmedizin, Berlin). HMC-1(5C6) cells were grown in Iscove’s Modified Dulbecco’s Medium (GIBCO, Grand Island, NY) containing 10% FBS (GIBCO), 100 U/ml penicillin, and 100 μg/ml streptomycin (GIBCO) [21 (link)].
The human mast cell line LAD-2 was kindly provided by Dr. AS Kirshenbaum (NIAID, Bethesda, MD). LAD2 cells were cultured in StemPro-34 serum-free medium (GIBCO) supplemented with 2 mM l-glutamine (GIBCO) and 100 ng/ml recombinant human SCF (R&D Systems, Inc., Minneapolis, MN) [22 ].
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7

Hematopoietic Cell Culture Reagents

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Saracatinib (Cat# S1006), vemurafenib (Cat# S1267), rapamycin (Cat# S1039) and hemin (Cat# S5645) were purchased from Selleck Chemicals (Shanghai, China). Recombinant human SCF (Cat# 255-SC-200) was purchased from R&D Systems (Shanghai, China). Recombinant human IL-3 (Cat# GMP200-03) was purchased from Peprotech (Suzhou, China). Erythropoietin (EPO) was purchased from Darbepoetin alfa Administration (Kyowa Hakko Kirin, Japan). StemSpan SFEM (Cat# 09650) was purchased from STEMCELL Technologies. Propylhydrazine hydrochloride (Cat# 114,715) was purchased from Sigma Aldrich.
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8

Differentiation Assay for Hematopoietic Progenitors

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DC differentiation assay was performed as described (23 (link)–25 (link)) with minor adaptation. Briefly, 1×104 purified progenitors, DC, and monocyte subsets were cultured in 96-well flat bottom plates layered with 4×104 murine MS5 stromal cells (DSMZ, Germany) in the presence of human FLT3 ligand (FL; 100 ng/ml; Miltenyi Biotec), recombinant human SCF (20 ng/ml; R&D Systems), and recombinant human granulocyte-macrophage colony-stimulating factor (GM-CSF) (10 ng/ml; Peprotech). MS5 stromal cells were seeded 24 hours prior to co-culture. Growth factors were replenished on day 3 of culture. Cells were in culture for up to 7 days prior to harvesting by physical dissociation on ice. Cells were then stained on ice either for flow cytometry analysis (see output panel in table S12) or single-cell index sorting of CD45+ cells for scRNA-seq of culture output analysis.
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9

Cultivation and Treatment of Neoplastic Mast Cell Lines

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The neoplastic huMC lines HMC‐1.1 (KIT V560G) and HMC‐1.2 (KIT V560G, KIT D816V) were kindly provided by Dr. JH Butterfield (Mayo Clinic, Rochester, MN, USA) (Butterfield et al., 1988 (link)). HMC‐1 cells were maintained in a humidified incubator at 37°C and 5% CO2 in T75 flasks in Iscove's modified Dulbecco's medium (IMDM, Corning) supplemented with 2 mM L‐Glutamine, 100 IU/ml penicillin, 100 μg/ml streptomycin (Corning) and 10% (v/v) fetal bovine serum (FBS, Gibco, Thermo Fisher Scientific). Cells were passaged every 3–4 days based on cell density. The LAD2 huMC line was maintained in serum‐free StemPro‐34 media supplemented with StemPro‐34 nutrient supplement (Gibco), 2 mM L‐Glutamine, 100 IU/ml penicillin, 100 μg/ml streptomycin (Corning) and 100 ng/ml recombinant human SCF (R&D Systems), as described (Kirshenbaum et al., 2003 (link)). Hemi‐depletions were performed weekly. Cell counts and viability (using acridine orange/propidium iodide stain, Logos Biosystems) were assessed on a Luna‐FL automated brightfield and dual fluorescence cell counter (Logos Biosystems). Cell treatment with 10 μM GW4869 (5 mM stock solution in DMSO; Sigma‐Aldrich), DMSO (vehicle control; Sigma‐Aldrich) or 10 μM amitriptyline (10 mM stock solution in water; Sigma‐Aldrich) was performed for 16 h.
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10

SCF/c-Kit Signaling Analysis Protocol

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For SCF/c-Kit signaling analysis, the cells were serum starved for 30 min and then pretreated with 4C9 antibody at the indicated concentrations for 30 min. Next, 100 ng/mL recombinant human SCF (R&D Systems, Minneapolis, MN, USA) was added and incubated for an additional 5 min. The cells were washed twice with DPBS and lysed using RIPA buffer (20 mM Tris-HCl, pH 7.6, 150 mM NaCl, 1 mM Na2EDTA, 1 mM EGTA, 1% NP-40, 1% sodium deoxycholate, 0.1% SDS, 10 mM β-glycerophosphate, 1 mM Na3OV4, 10 mM NaF, 1 μg/mL leupeptin, 1 mM PMSF, 5 μg/mL aprotinin, and 2 mM 2-mercaptoethanol). The protein extracts were subjected to SDS-PAGE and transferred onto PVDF membranes (Millipore, Burlington, MA, USA). The membranes were blocked with 1 × TBST containing 5% BSA at room temperature (RT) for 1 h and probed with the following antibodies: anti-c-Kit (R&D Systems, Minneapolis, MN, USA), anti-p-c-Kit (Tyr568/570, Tyr703, Tyr719, and Tyr823; Cell Signaling Technology, Beverly, MA, USA), anti-Erk1/2 (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-p-Erk1/2 (Cell Signaling Technology, Beverly, MA, USA), anti-Akt (Santa Cruz Biotechnology, Santa Cruz, CA, USA), anti-p-Akt (Ser473; Cell Signaling Technology, Beverly, MA, USA), and anti-α-tubulin (generated in our laboratory).
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