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29 protocols using p mlc

1

CDM-Mediated Cytoskeletal Dynamics Analysis

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CDMs were generated on 3.5 cm cell culture dishes Advanced TC (Greiner Bio-One International GmbH, Kremsm€ unster, Austria) without any precoating. Cells were seeded and CDMs were synthesized over a period of 7 days as described before. CDMs were decellularized and WT cells were seeded and incubated for 3 hours. Afterward the dishes were washed with PBS and fixed with 4% PFA. For analyzing Myosin-II-activity, YAP/TAZ nuclear translocation and morphological features immunofluorescence staining was employed as described before. Following antibodies were used: pMLC (#3671, Cell Signaling), pMLC (#3674, Cell Signaling), YAP/TAZ (#8418, Cell Signaling). Fluorescence intensities (gray values) were quantified from images using Fiji ImageJ. For pMLC analysis cell bodies were segmented based on Phalloidin (F-Actin) co-staining. For YAP/TAZ analysis cell nuclei were segmented based on DAPI co-staining.
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2

Immunofluorescence Analysis of Embryo Development

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Pre-implantation embryos were fixed and stained as previously described (Bedzhov et al., 2012 ). Peri-implantation embryos were fixed with 4% PFA/PBS for 20 min. Cellular permeabilization was carried out for 10 min in 0.1M Glycin, 0.3% Triton X-100/PBS. The embryos were in incubated in primary antibody in 10% FCS/PBT for 2h to overnight at room temperature. Secondary antibodies were applied subsequently for 2h. Embryos were stained with DAPI (Invitrogen) and mounted in PBS droplets covered with mineral oil in glass bottom petri dishes. Confocal microscopy was performed using a Leica SP5 microscope and the images were processed using Imaris software (Bitplane). Antibodies: cleaved Caspase-3 (1:200, Cell signaling, 9664), Oct4 (1:200, Santa Cruz, sc-5279), Sox2 (1:200, Santa Cruz, sc-17320), aPKC (1:200, Santa Cruz, sc-216), Par6 (1:200, Santa Cruz, sc-67393), E-cad (1:200, (Vestweber and Kemler, 1984 )), gm130 (1:200, Calbiochem, CB1008), Eomes (1:200, Abcam), Nanog (1:200, Abcam, ab80892), Laminin (1:500, Sigma, L9393), Sox17 (1:200, R&D systems, AF1924), pMLC (1:200,Cell signaling, 3674), podocalyxin (1:200, R&D systems, MAB1556), β1-integrin (1:200, BD Pharmigen, 555005).
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3

Western Blot Analysis of Cell Signaling

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Cell lysates were prepared using RIPA buffer (9806, Cell Signaling) supplemented with protease and phosphatase inhibitors (11836153001 and 4906845001; Roche) according to manufacturer's instructions. Lysates were mixed with 4× Loading Buffer (928‐40004, Li‐Cor) and denatured at 95°C for 5 min prior to electrophoresis. SDS‐PAGE was performed with the NuPAGE® electrophoresis system (Thermo Fischer) including 4%–12% Bis‐Tris gels (Thermo Fischer, # NP0336BOX) and MES SDS Running Buffer (NP0002; Thermo Fisher) according to the manufacturer's instructions. Western blotting onto nitrocellulose membranes (10600002; GE Healthcare) was performed inside an XCell II™ Blot Module (Thermo Fischer) for 1 h at 30 V constant (25 mM Tris‐BASE; 192 mM Glycine, 20% (v/v) Methanol transfer buffer). Membranes were washed with TBS (15 mM Tris–HCl pH 7.6; 136 mM NaCl) and blocked with TBS Blocking Buffer (927‐50000, Li‐Cor). Primary antibodies were incubated at 4°C overnight according to manufacturer's instructions. The following antibodies were used: Phospho‐Histone H2A.X (Ser139) (2577, Cell Signaling), Cyclin D1 (2978, Cell Signaling), Lamin B1 (13435, Cell Signaling), p16Ink4a (80772, Cell Signaling), p21Cip1 (2948, Cell Signaling), GAPDH (2118, Cell Signaling), FLAG (740001, Thermo Fischer), pMLC (3675, Cell Signaling), and alpha‐SMA (ab5694, Abcam).
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4

Immunocytochemistry for GPER and p-MLC

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Cells were grown on a cover slip, serum deprived for 18 h and then exposed to treatments for 16 h. Next, cells were fixed in 4% paraformaldehyde in PBS, permeabilized with 0.2% Triton X-100, washed 3 times with PBS and incubated at 4 °C overnight with a primary antibody (1:250) against GPER (AB137479) (Abcam, DBA, Milan, Italy) or Phospho-Myosin Light Chain 2 (Ser19) (p-MLC) (Cell Signaling, Euroclone, Milan, Italy). After incubation, the slides were extensively washed with PBS, probed with alexa Fluor 594 goat anti-rabbit IgG (1:300, Thermo Fisher Scientific) and 4′,6-diamidino-2-phenylindole dihydrochloride (DAPI) (1:1000; Sigma-Aldrich). Then, the images were obtained using the Cytation 3 Cell Imaging Multimode reader (BioTek, AHSI, Milan Italy) and analyzed by the Gen5 software (BioTek, AHSI, Milan Italy).
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5

Western Blotting Analysis of Protein Expression

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Cells and tissue were collected, and processed for western blotting by solubilizing extracts in radioimmunoprecipitation assay (RIPA) buffer with protease inhibitor cocktail (Roche #04693159001) and phosSTOP (Roche, # 04906837001)). Protein lysates were resolved by polyacrylamide gel electrophoresis (PAGE) under reducing conditions (4–12% sodium dodecyl sulfate–PAGE Bis–Tris gels; MOPS buffer system; Invitrogen; NuPAGE-MOPS system). The gels were blotted onto nitrocellulose or PVDF membranes and blocked in either 5% milk or 1% bovine serum albumin and followed by primary antibody incubation for overnight (NUAK2 (Cat#sc-374348, 1:100, Santa Cruz), YAP (Cat#14071, 1:1000, Cell Signaling), GAPDH (Cat#3683, 1:10000, Cell Signaling), actin (Cat#A5316, 1:1000, Sigma), pMLC (Cat#3671, 1:1000, Cell Signaling), MLC (Cat#M4401, 1:1000, Sigma), TAZ (Cat#4883, 1:1000, Cell Signaling), NF2 (Cat#12888, 1:1000, Cell Signaling)). MYPT1 and p-MYPT1 (S445) antibodies were a kind gift from Dr. Dario Alessi43 (link). After washing with TBST, membranes were incubated with horseradish peroxidase-conjugated secondary antibodies for 1 h. Blots were washed with TBST and developed with the enhanced chemiluminescence system. Uncropped Western blot images of data shown in Figures can be found in Supplementary Figure 6.
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6

Immunoblotting Protocol for Protein Detection

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The following primary and secondary antibodies were utilized: Gαi1/2 (anti-sera) [53 ], PDZ-RhoGEF (ab110059, abcam), HA (3724, Cell Signaling), FLAG (F1804, Sigma), P-MLC (3671, Cell Signaling), c-myc (13-2500, Invitrogen), Streptavidin-IRDye800 (925-32230, LI-COR), GFP (A11122, Invitrogen). Primary antibodies were made in 3% BSA and 0.1% Sodium azide and the blots were incubated in primary antibody overnight at 4 °C except 1 hr incubation at RT for Streptavidin-IRDye800. Secondary antibody goat anti-rabbit DyLight™ 800 (SA535571, Invitrogen), goat anti-mouse IRDye 800CW (926-32210, LICOR) at 1:10,000 dilution and goat anti-rabbit Alexa Fluor 488 (A11034, Invitrogen) at 1:1000 dilution.
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7

Western Blot Analysis of Tight Junction Proteins

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Cellular samples were collected and lysed, and the protein concentration was determined using the BCA method. Based on the target protein molecular weight, a suitable concentration of protein electrophoresis gel was selected for protein electrophoresis, membrane transfer, and then blocked for 1 h. Primary antibodies against ZO-1 (1:1000, Cat#AF5145, Affinity Biosciences, China), MLCK (1:800, Cat#AF5314, Affinity Biosciences, China), p-MLC (1:1000, Cat#95777, Cell Signaling Technology, USA), MLC (1:1000, Cat#8505, Cell Signaling Technology, USA), and β-actin (1:2000, Cat#4970, Cell Signaling Technology, USA) were incubated overnight at 4° C on a shaker. Secondary antibodies (1:5000, Cat#58802, Cell Signaling Technology, USA) were then incubated for exposure, and the images were recorded using a Bio-Rad Chemidoc XRS+ imaging system. The protein expression levels were calculated using the software ImageJ for grayscale analysis.
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8

Immunofluorescence Assay for Cytoskeletal Proteins

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Cells were fixed with 4% paraformaldehyde/phosphate-buffered saline (PBS) for 10 min at room temperature, followed by three washes in PBS. Cells were permeabilized in 0.01% Triton/PBS for 1 min, followed by three washes in 0.01% Tween/PBS and then blocked with PBS supplemented with 10% donkey serum for 1 h. Cells were incubated with primary antibody (YAP (Cat#14071, 1:200, Cell signaling), pMLC (Cat#3671, 1:100, Cell signaling), actin (Cat#A5316, 1:200, Sigma) and Flag (Cat#F3165, 1:400, Sigma)) in blocking buffer for overnight. After three washes in 0.1% Tween PBS, cells were incubated in secondary antibody and 1 μg/ml DAPI for 1 h at room temperature. Cells were then washed, mounted and examined with a confocal microscope (Zeiss LSM 700 Laser Scanning Confocal), equipped with a 25× or 40× oil objective lens or epimicroscope (Zeiss Axio Observer Z1).
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9

Western Blot Analysis of Cytoskeletal Proteins

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Tissue fragments and cultured cells were lysed with Laemmli buffer. Lysates were separated by a 10% SDS-PAGE and Western blotting was carried out following standard protocols. For detection, the following primary antibodies were used: MRCKα (#374568), MRCKβ (#374597), GAPDH (#25778; all SantaCruz Biotechnology, Dallas, TX, USA), pMLC (#3674), pCofilin (#3311; all Cell Signaling, Danvers, MA, USA), β actin (#AB6276, Abcam, Cambridge, MA, USA). For detection, appropriate HRP coupled secondary antibodies were used: horse-anti-mouse IgG (#VECTPI2000), goat-anti-rabbit IgG (#VECTPI1000, all Vector Laboratories, Burlingame, CA, USA). LuminataTM Western HRP Chemiluminescence Substrates detection reagent (Milipore, Hellerup, Denmark) was used for chemiluminescence, which was then detected with Medical X-ray film (AGFA, Birkerød, Denmark). The intensity of the bands was quantified using ImageJ software.
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10

Protein Expression Analysis in Endothelial Cells

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Cells were lysed using lysis buffer (Cell Signaling, Beverly, MA, USA) with phosphatase inhibitor cocktail 2 (Sigma). Cell membrane proteins were separated using plasma membrane protein extraction kit (Abcam, Cambridge, MA, USA). Protein lysates were separated using sodium dodecyl sulfate–polyacrylamide gel electrophoresis gel, transferred to polyvinylidene difluoride membranes, blocked with 5% bovine serum albumin for 1 h, and incubated overnight at 4°C with primary antibodies to: p-MLC, MLC, p-cofilin, cofilin (Cell Signaling), VE-Cadherin (Enzo, Boston, MA, USA), zona occudens-1 (ZO-1) (Invitrogen, Grand Island, NY, USA), occludin (Abcam), claudin 5 (Invitrogen), β actin (Invitrogen), and NaKATPase (Abcam). After washing and incubation with the secondary antibody, the proteins were visualized with the enhanced chemiluminescence system (GE Healthcare Bio-Science, Pittsburgh, PA, USA) by exposure on film or in the G:box system (Syngene, Frederick, MD, USA). The relative densities of bands were analyzed, using NIH ImageJ, Bethesda, MD, USA.
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