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23 protocols using β tubulin

1

Phytochemical Extraction and Antibody Procurement

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(−)‐gallocatechin, (−)‐epigallocatechin, (−)‐catechin, (−)‐epigallocatechin‐3‐gallate, caffeine, (−)‐epicatechin, (−)‐gallocatechin gallate, and (−)‐epicatechin‐3‐gallate were purchased from Biopurify Phytochemicals Ltd. (Chengdu, China) at a purity >95% according to the manufacturer's specifications. Antibodies against nuclear factor‐kappa light‐chain enhancer of activated B cells (NF‐κB), uncoupling protein‐1 (UCP‐1), and β‐tubulin were obtained from Affinity Biosciences Inc. All other reagents were purchased from Sigma‐Aldrich unless otherwise noted.
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2

Immunodetection of Key Signaling Proteins

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The following antibodies were used: RNF8 (Proteintech, # 14112-1-AP), β-tubulin (Affinity, # T0023), CD3 (Affinity, # DF6594), IL-12 (Affinity, # AF5133), IFN-γ (Affinity, # DF6045), CXCL-9 (Affinity, # DF9920), CXCL-10 (Affinity, # DF6417), galectin-3 (Proteintech, # 14979-1-AP), HIF-1α (Proteintech, # 66730-1-Ig), p-IκBα (Abcam, # ab133462), NF-κB (Abcam, # ab16502), P-NF-κB (Santacruze, # sc-101752), PCNA (Proteintech, # 60097-1-Ig), Flag (Proteintech, # 20543-1-AP), HA (Proteintech, # 66006-2-Ig), His (Proteintech, # 66005-1-Ig), ubiquitin (CST, # 91112 S), K48 (CST, # 12805), K63 (CST, # 5621S). Secondary anti-mouse (# SA00001-1), and anti-rabbit (# SA00001-2) horseradish-coupled antibodies were from Proteintech.
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3

Comprehensive Protein Profiling in Lung Tissues

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All proteins were collected from cells or lung tissues as reported previously (Ning et al., 2004 (link)). The monoclonal antibodies used in this study were: α-SMA (Affinity, BF9212), Collagen Ⅰ (Affinity, AF7001), Fibronectin (Affinity, AF5335), β-tubulin (Affinity, T0023), GAPDH (Affinity, AF7021), Phospho-Smad3 (Affinity, AF3362), Smad3 (Affinity AF6323), Smad2 (Affinity, AF6449), Phospho-Smad2 (Affinity, AF3450 Phospho-p38 (Affinity, AF4001), p38 (Affinity, BF8015), Phospho-JNK (Affinity, AF3318), JNK (Affinity, AF6318), Phospho-ERK (Affinity, AF1015), ERK (Affinity, AF0155), Phospho-AKT (Affinity, AF0832), AKT (Affinity, AF6212), Cleaved PARP (Affinity, AF7023), E-cadherin (Cell Signaling Technology, 14472S), N-cadherin (Cell Signaling Technology, 13,116), Vimentin (Cell Signaling Technology, 5,741). The monoclonal antibodies are diluted 1:1,000 with skimmed milk powder.
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4

Immunodetection of Sperm Flagellar Proteins

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DNALI1 (Abnova, H00007802-B01P, mouse), β-TUBULIN (Affinity, AF7011, Rabbit), AKAP4 (FineTest, FNab00256, Rabbit), GAPDHS (Sigma-Aldrich, HPA042666, Rabbit), DNAH1 (Thermo Fisher, PA5-57826, Rabbit), DNAH12 (Thermo Fisher, PA5-63952, Rabbit), DNAH7 (Bioss, bs-11023R, Rabbit), DNAH10 (Bioss, Bs-11022R, Rabbit). Anti-DRC1 and anti-AKAP3 were gifts from the Liu laboratory [26 (link)] and the Qi Laboratory [27 (link)], respectively.
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5

Western Blot Analysis of TLR4 Signaling

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DRG tissues were harvested, washed, homogenised, and extracted using RIPA lysis buffer (Beyotime Biotechnology Co., Ltd.) containing protease inhibitor. Protein concentrations of lysates were measured by the bicinchoninic acid method (Beyotime Biotechnology Co., Ltd.). Protein samples were electrophoresed in a 10% SDS-PAGE gel and transferred to polyvinylidene difluoride membranes (Millipore, Billerica, MA, USA). The membranes were blocked with 5% non-fat milk and incubated with the following primary antibodies overnight at 4 °C: TLR4 (1:1000; Affinity Biosciences, Ltd., Cincinnati, OH, USA); MyD88, Keap1 (1:1000; Cell Signalling Technology, USA); NF-κB p65, p-NF-κB (1:1000; Absin Biotechnology Co., Ltd); PI3K, Akt, phospho-Akt(p-Akt) (1:1000; from Cell Signaling Technology, USA); Nrf2 (1:1000; Abcam); HO-1(1:1000, ABclonal Biotechnology Co., Ltd); and β-tubulin (1:3000; Affinity Biosciences, Ltd., Cincinnati, OH, USA). Afterwards, the membranes were washed with PBST, incubated with HRP-conjugated secondary antibodies (Affinity Biosciences, Ltd.), and visualised by enhanced chemiluminescence (Beyotime Biotechnology Co. Ltd.). The results were quantified using the NIH ImageJ software. Catalog numbers of antibodies in the western blotting test are listed in Additional file 1: Table S3.
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6

Neuroinflammation and Synaptic Dysfunction Markers

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KCC2 (Millipore, 07-432), GABA A R (Abcam, ab94585), GABA B R (Affinity, AF0162), BDNF (Affinity, DF6387), β-Amyloid 1-42 (Abcam, ab201060), TNF-α(Affinity, AF7014), IL-6 (Servicebio, GB11117), IL-1β (Affinity, AF5103), NLRP1 (Abcam, ab3683), NLRP3 (Abcam, ab214185), AMPAR (Abcam, ab31232), PSD95 (Thermo, MA1-045), Iba-1 (Servicebio, GB11105), GFAP (Servicebio, GB12096), β-Tubulin (Affinity, T0023), β-Actin (Affinity, AF7018), Goat Anti-Rabbit IgG (H+L) HRP (Affinity, S0001), Goat Goat Anti-Mouse IgG (H+L) HRP (Affinity, S0002).
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7

Rat Model of Pancreatic Injury

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Sprague Dawley (SD) rats, weighing 200–250 g, were purchased from Chengdu Dashuo Experimental Animal Co., Ltd. (animal license No.: SCXK (Chuan) 2020-030). The multifunctional animal impact equipment has been authorized patent (self-developed, patent number: ZL 2016 1 0347341.5). hUC-MSCs were provided by the Chengdu KangErmei Biological Cell Preparation Center (Number: G01210001). The ELISA kits for serum amylase, lipase, and rat IL-6, IL-10, TGF-β, and TNF-α were purchased from Shanghai Jiaocai Biological Technology Co., Ltd. Bax, Bcl-2, and caspase-3, and β-tubulin antibodies were purchased from Affinity Biosciences (Cincinnati, USA). TUNEL kits was purchased from Roche Group (Switzerland).
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8

Western Blot Analysis of Inflammasome Signaling

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RIMVECs were seeded, divided into groups, and treated as described in the in vitro experiment paragraph. Total proteins were extracted using the radio immunoprecipitation assay (RIPA) cell lysis buffer for 10 min, and protein concentration was determined using the bicinchoninic acid (BCA) protein detection kit (Beyotime Biotechnology, China). A standard western blot protocol was performed, and the following primary antibodies were used overnight at 4°C: TLR4 (1:800) (ABclonal, Wuhan, China), NLRP3 (1:1000) (ABclonal), GSDMD (1:1000) (ABclonal), caspase-1 (1:1000) (ABclonal), ASC (1:1000) (ABclonal), NF-κB p65 (1:1000) (Abmart, Shanghai, China), p-NF-κB p65 (1:400) (Abmart), p-I-κB (1:1000) (Abmart), I-κB (1:1000) (Abmart), IL-18 (1:1000) (Affinity Biosciences, Colorado, USA), IL-1β (1:1000) (Affinity Biosciences), claudin-1 (1:1000) (Affinity Biosciences), claudin-2 (1:1000) (Affinity Biosciences), ZO-1 (1:1000) (Affinity Biosciences), and β-tubulin (1:1000) (Affinity Biosciences) used as loading control, followed by the incubation with HRP (Horseradish Peroxidase)-conjugated secondary antibodies (1:5000) (ABclonal) for 1 h at room temperature. The blots were visualized using a Tanon 5200 chemiluminescence imaging system (Shanghai, China) and quantified using the ImageJ software (National Institutes of Mental Health, Bethesda, MD, USA).
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9

Protein Extraction and Western Blot Analysis

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The protein extraction and Western blot analysis were performed as previously described. The following antibodies were applied: anti-mouse monoclonal anti- SIRT1 was from Proteintech (60303, Proteintech, China), rabbit polyclonal anti- Phospho-NF-kB P65 (Ser536) was from Affinity Biosciences (AF2006, Affinity Biosciences, USA), rabbit polyclonal anti-NF-kB P65 was from Affinity Biosciences (AF5006, Affinity Biosciences, USA), rabbit polyclonal Anti-Heparanase 1 was from HuaBio (ER1910-48, HuaAn Biotechnology, China), β‐tubulin was from Affinity Biosciences (T0023, Affinity Biosciences, USA).
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10

Western Blot Analysis of Protein Expression

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Tissues were lysed in radioimmunoprecipitation assay (RIPA) buffer (Beyotime, Shanghai, China) with phenylmethanesulfonyl fluoride (PMSF) (Biosharp, Anhui, China) on ice after grinding with liquid nitrogen. Cells were collected and washed three times with phosphate-buffered saline (PBS) (KeyGEN BioTECH, Nanjing, China) and then lysed in RIPA with cocktail (Cellpro, Suzhou, China) on ice. After electrophoresis, the proteins were transferred to polyvinylidene fluoride (PVDF) membranes (Millipore, CA, USA). After blocking with 5% non-fat milk at room temperature for 2 h, the PVDF membranes were incubated with primary antibodies, including SUN5 (Thermo Fisher Scientific, Sunnyvale, CA, USA, 1:1000), β-tubulin (Affinity, Liyang, China, 1:10,000), pERK1/2 (Cell Signaling Technology, Danvers, MA, USA, 1:1000), and Nesprin2 (GeneTex, Irvine, CA, USA, 1:1000) at 4 °C overnight. After washing with TBST three times, horseradish-peroxidase-coupled mouse or rabbit secondary antibodies (Beyotime, Shanghai, China, 1:1000) were used for hybridization at room temperature for 1 h. Signals were visualized using an enhanced chemiluminescent (ECL) kit (Biosharp, Anhui, China), photographed, and measured using the VisionWorks system (Analytik Jena AG, Jena, Germany). The results are representative of at least three independent experiments.
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