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4 protocols using phospho h2a x s139

1

Immunoblotting Analysis of Cellular Signaling

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Cells were lysed in RIPA buffer and subjected to immunoblotting. The following antibodies were used: ACC1 (Cell Signaling); p-ACC1 (Cell ignaling); AMPK (Cell Signaling); p-AMPK(T172) (Cell Signaling); H2AX (Cell Signaling); phospho-H2AX(S139) (Cell Signaling); DNA-PK (Lab Vision); p-DNA-PK(S2056) (Abcam); LKB1 (Santa Cruz); HSP90α (Millipore); p-HSP90(T5,7) (Cell Signaling); PGC-1α (Santa Cruz); Cyto C (Cell Signaling); Actin (Santa Cruz). Densitometry was performed with the ImageJ software (NIH, Bethesda, MD, USA).
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2

Antibody Validation for Western Blot and Immunofluorescence

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The following antibodies were used for western blot: BARD1 (Bethyl A300-263A, 1:500), BARD1 (Abcam ab64164, 1:500), SLF1 (Novus Biologicals NBP1-88358, 1:500), HA (HA.11, BioLegend 901513, previously Covance MMS-101P, 1:500), H4K20me2 (Diagenode C15200205, 1:3000), GFP (Roche 11 814 460 001, mixture of clones 7.1 and 13.1, 1:500), SET8 (Millipore, 06-1304, 1:1000), OsTIR1 (a gift from Masato Masato T. Kanemaki, 1:1000), Actin (Sigma A1978, 1:2000) and BRCA1 (Santa Cruz Biotechnology sc-6954, clone 9, 1:400). The following antibodies were used for immunofluorescence: BARD1 (Bethyl A300-263A, 1:500), BRCA1 (Santa Cruz Biotechnology sc-6954, clone 9, 1:400), 53BP1 (Santa Cruz Biotechnology H-300, 1:500), H4K20me1 (Abcam ab9051, 1:250; validated in Supplementary Fig. 2g), H4K20me2 (Diagenode C15200205, 1:250; validated in Supplementary Fig. 2g), H4K20me0 (Abcam ab227804, 1:10000; validated in Supplementary Fig. 2g), Phospho-H2A.X (S139) (Cell Signalling Technology 2577, 1:1000), HA (Roche 1 867 423, 1:200), HA (Bio Legend 901509, 1:100), BrdU (Eurobio ABC117-7513, 1:1000), and MCM2 (BD Biosciences 610701, 1:150).
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3

Antibody Validation for Western Blot and Immunofluorescence

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The following antibodies were used for western blot: BARD1 (Bethyl A300-263A, 1:500), BARD1 (Abcam ab64164, 1:500), SLF1 (Novus Biologicals NBP1-88358, 1:500), HA (HA.11, BioLegend 901513, previously Covance MMS-101P, 1:500), H4K20me2 (Diagenode C15200205, 1:3000), GFP (Roche 11 814 460 001, mixture of clones 7.1 and 13.1, 1:500), SET8 (Millipore, 06-1304, 1:1000), OsTIR1 (a gift from Masato Masato T. Kanemaki, 1:1000), Actin (Sigma A1978, 1:2000) and BRCA1 (Santa Cruz Biotechnology sc-6954, clone 9, 1:400). The following antibodies were used for immunofluorescence: BARD1 (Bethyl A300-263A, 1:500), BRCA1 (Santa Cruz Biotechnology sc-6954, clone 9, 1:400), 53BP1 (Santa Cruz Biotechnology H-300, 1:500), H4K20me1 (Abcam ab9051, 1:250; validated in Supplementary Fig. 2g), H4K20me2 (Diagenode C15200205, 1:250; validated in Supplementary Fig. 2g), H4K20me0 (Abcam ab227804, 1:10000; validated in Supplementary Fig. 2g), Phospho-H2A.X (S139) (Cell Signalling Technology 2577, 1:1000), HA (Roche 1 867 423, 1:200), HA (Bio Legend 901509, 1:100), BrdU (Eurobio ABC117-7513, 1:1000), and MCM2 (BD Biosciences 610701, 1:150).
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4

Immunofluorescence analysis of DNA repair proteins

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For immunofluorescence, 15,000 HT1080, HT1080-BRCA1KO, or HT1080-PALB2KO cells were plated on coverslips 24 hours prior to treatment. Cells were either irradiated with 8Gy of ionizing radiation or left unirradiated. Cells were allowed to recover for 2 hours, fixed with 10% formalin for 15 mins, washed with 1x PBS, permeabilized with 0.5% Triton-X and 0.2M HCl for 10 minutes, washed again with 1x PBS and blocked with a 4:1 ratio of 10% BSA in PBS-Tween 0.05% and 20% FBS in PBS for 75 minutes. After blocking, cells were rinsed with PBS and incubated with primary antibodies against Rad51 (Mouse Anti-Rad51 monoclonal, Abcam ab213, diluted at 1:500) or γH2AX (Rabbit mAb Phospho-H2A.X S139, Cell Signaling #9718, diluted at 1:1000) overnight at 4°C. The following day the cells were washed with PBS and incubated with secondary AlexaFluors (Goat anti-Mouse IgG (H+L) Secondary Antibody AlexaFluor 568; Goat anti-Rabbit IgG (H+L) Secondary Antibody AlexaFluor 488, diluted at 1:500) in blocking buffer for 1 hour. Cells were again rinsed with PBS and subsequently dH2O. Coverslips were gently dried and fixed onto slides with ProLongGold + DAPI dye and imaged on an ECHO Revolve Light Microscope. Images were compiled and analyzed using ImageJ.
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