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Rt2 sybr green reagent

Manufactured by Qiagen
Sourced in Germany

The RT2 SYBR® Green reagent is a ready-to-use solution designed for real-time PCR gene expression analysis. It contains SYBR® Green I dye, which binds to double-stranded DNA, enabling the detection and quantification of gene expression levels.

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4 protocols using rt2 sybr green reagent

1

Quantitative gene expression analysis

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Total RNA was extracted from BM cells and splenocytes using TRIzol reagent (Invitrogen, MA, USA) and isopropanol precipitation according to manufacturer’s recommendations. cDNA was synthesised from 1.5 μg total RNA using Superscript™ IV reverse transcriptase (Invitrogen) as per manufacturer’s protocol. qPCR was performed on the Quantstudio 3 Real-Time PCR System (Applied Biosystems, MA, USA) using RT2 SYBR® Green reagent (QIAGEN, Hilden, Germany). Gene expression was analysed using the ΔCt method (2−ΔCt) normalised to RPLP0. RPLP0 normalisation was chosen based on its known stability as a reference gene in HFD-fed C57BL/6J mice65 (link), and its stability as a housekeeping gene in BM66 (link). The following primers were used: RPLP0 F: 5′ AGATTCGGGATATGCTGTTGGC 3′, RPLP0 R: 5′ TCGGGTCCTAGACCAGTGTTC 3′, TNFα F: 5′ CCTGTAGCCCACGTCGTAG 3′, TNFα R: 5′ GGGAGTAGACAAGGTACAACCC 3′, IL1β F: 5′ GCCACCTTTTGACAGTGATGAG 3′, IL1β R: 5′ AGCTTCTCCACAGCCACAAT 3′, IL6 F: 5′ TAGTCCTTCCTACCCCAATTTCC 3′, IL6 R: 5′ TTGGTCCTTAGCCACTCCTTC 3′, MPO F: 5′ TCCCACTCAGCAAGGTCTT 3′, MPO R: 5′ TAAGAGCAGGCAAATCCAG 3′, human MYC F: 5′ CGTCCTCGGATTCTCTGCTC 3′, human MYC R: 5′ GCTGCGTAGTTGTGCTGATG 3′.
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2

Quantitative Real-Time PCR Analysis of Gene Expression

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Total RNA was extracted from BM cells and KaLwRij matured macrophages using Trizol reagent (Life Technologies) according to the manufacturer's instructions. Following which, cDNA was synthesized using Superscript IV (Life Technologies) as per manufacturer's protocol. Gene-specific quantitative real-time PCR was conducted on a Bio-Rad CFX 9000 qPCR instrument using RT2 SYBR Green reagent (QIAGEN, Hilden, Germany) and primer pairs as shown in Supplementary Table I. Resultant gene expression was analyzed using the ΔCt method (2ΔCt) normalized to β-actin.
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3

Quantitative Analysis of Inflammation Markers

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qRT-PCR was used to quantitate the effect of unconjugated modmRNA-LNP on the expression of MIP-2, TLR-3 and TLR-4 proteins in livers and spleens from either naive or inflamed mouse models. Total RNA was extracted from tissues using Trizol reagent (Life Technologies) according to the manufacturer's instructions. Consequently, cDNA was synthesized using the reverse transcriptase kit from Promega (Promega Inc., Madison WI) as per manufacturer's protocol. Quantitative real-time PCR was conducted on a Bio-Rad CFX 9000 qPCR instrument using RT2 SYBR Green reagent (QIAGEN, Hilden, Germany).
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4

Quantifying Gene Expression via RT-qPCR

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Total RNA was extracted using TRIzol (Invitrogen) as per manufacturer's instructions. cDNA was synthesised using Superscript IV (Invitrogen) as per manufacturer's instructions. Quantification of gene expression was achieved using RT2 SYBR® Green reagent (Qiagen), on a QuantStudio™ 3 real‐time PCR system (Applied Biosystems) as previously described.
29 (link) Sequences for mouse primers are outlined in Table S1. Changes in gene expression were calculated relative to Gapdh using the ΔCt method (2−ΔCt).
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