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Hairpin ittm microrna qpcr quantitation kit

Manufactured by GenePharma
Sourced in China

The Hairpin-it™ microRNA qPCR Quantitation Kit is a laboratory tool designed for the quantitative analysis of microRNA expression levels using real-time PCR technology. The kit provides a standardized and efficient method for the detection and quantification of specific microRNA sequences.

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5 protocols using hairpin ittm microrna qpcr quantitation kit

1

Quantitative Analysis of mRNA and miRNA

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RNA was extracted by using TRIzol (Invitrogen). The extracted RNA was washed and resuspended in nuclease-free water before being treated with DNase I. Total RNA was quantified and its purity was evaluated using a Nanodrop 2000 (Thermo Fisher Scientific). The mRNA reverse transcription kit (Takara) and TaqMan reverse transcription kit (Life Technologies) were used for reverse-transcribing mRNA and miRNA, respectively, as per manufacturer’s instructions.
Universal SYBR Green Master mix (Applied Biosystems) was used to perform quantitative PCR (qPCR) for analyzing the mRNA expression, while Hairpin-itTM microRNA qPCR Quantitation Kit (GenePharma) was applied to detect miR-214 in RA-FLS. All qPCR experiments were completed on a 7500 real-time PCR system (Applied Biosystems); GAPDH and U6 small nucleolar RNA (snoRNA) were used as endogenous controls for normalizing the expression of the mRNA and miRNAs, respectively.
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2

Quantitative Analysis of miRNA Expression

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Total RNA was isolated from the tissue and cell lines using TRIzol® reagent (Invitrogen, CA, USA). The total RNA was treated with DNase I and reverse transcribed into cDNA. The expression levels of miRNA were assessed using a Hairpin-itTM microRNA qPCR Quantitation Kit (GenePharma, Shanghai, China) according to the standard protocol. The expression of U6 was used as an endogenous control. The total cDNA was used as the starting material for real-time PCR with FastStart Universal SYBR Green Master (Roche Applied Science, Mannheim, Germany) using the StepOne real-time PCR System (Life Technologies Corp. Waltham, MA, USA). The Primer Premier software (PREMIER Biosoft International, Palo Alto, CA, USA) was used to design specific primers for miR-433-3p, Rap1a and GAPDH based on known sequences (Table 1). The expression levels of each target gene were normalized to the corresponding GAPDH or U6 threshold cycle (CT) values using the 2-△△CT comparative method.
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3

Molecular Analysis of Signaling Pathways

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qPCR and Western blot were performed as previously reported 19 (link). qPCR was carried out using the Hairpin-itTM microRNA qPCR Quantitation Kit (GenePharma, Shanghai, China) and LightCycler 96 (Roche, Germany). U6 snRNA was used as an internal control for miR-92b, and the mRNA levels of PTEN, TNF-α and IL-6 were normalized to GAPDH. The 2-ΔΔCt method was employed to calculate relative expression of each gene. For Western blot analysis, the protein blots were incubated with following antibodies: rabbit anti-TLR4 (1:1000, 7074, Cell Signaling Technology, USA), rabbit anti-phospho-NF-κB p65 (1:1000, 3033, Cell Signaling Technology, USA), rabbit anti-NF-κB p65 (1:1000, 4764, Cell Signaling Technology, USA), rabbit anti-β-actin (1:1000, 4970, Cell Signaling Technology, USA), rabbit anti-Bax (1:200, bs-0127R, Bioss, China), rabbit anti-Bcl-2 (1:200, bs-4563R, Bioss, China), rabbit anti-phospho-PI3K (1:200, bs-3332R, Bioss, China), rabbit anti-PI3K (1:1000, ab227204, Abcam, USA), rabbit anti-phospho-AKT (1:1000, ab8932, Abcam, USA), rabbit anti-AKT (1:500, GB111114, Servicebio, China), rabbit anti-β-catenin (1:5000, ab196204, Abcam, USA). The optical density (OD) value of each protein band was quantified using the Image-Pro Plus 6.0 (IPP 6.0) software (Media Cybernetics Inc., USA) and normalized to β-actin.
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4

Quantitative Analysis of miRNA Expression

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The expression of miRNAs was confirmed using the stem-loop qRT-PCR method. Total RNA was extracted by TRIzol (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s recommendation (Invitrogen, USA) and then reverse-transcribed into cDNA using a Reverse Transcriptase M-MLV (TaKaRa) and Hairpin-itTM microRNA qPCR Quantitation Kit (GenePharma, Shanghai, China). qPCR was performed using a SYBR® Select Master Mix kit and standard protocols on a Step One Plus Real-Time PCR System (Applied Biosystems, USA). For let-7 miRNAs and RNA sequencing data validation, the Poly(A) Plus real-time PCR method was used. Total RNA was isolated and reverse-transcribed into cDNA by a themiRcute Plus miRNA First-Strand cDNA Synthesis Kit (#KR211-02, Tiangen Biotech Co., Ltd, Beijing, China) and subsequently determined using a miRcute Plus miRNA qPCR Detection Kit (SYBR Green) (#FP411-02, Tiangen Biotech Co., Ltd, Beijing, China) according to the manufacturer’s recommendation. U6 small nuclear RNA was used as an internal control for miRNAs, and mRNA levels were normalized to glyceraldehyde 3-phosphate dehydrogenase (GAPDH). The 2−ΔΔCt comparative method was used to analyze the expression levels. The mRNA, miRNA and U6 primers are listed in Supplemental Table 1.
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5

Quantitative miRNA Expression Analysis

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Total RNA was isolated using TRIzol® reagent (Invitrogen) and cDNA was synthesized using the HiScript® II Q Select RT SuperMix for qPCR kit (Vazyme Biotech Co., Ltd). Quantitative RT–qPCR was performed in duplicate using FastStart Universal SYBR Green Master Mix (Roche Applied Science) using the StepOne real‐time PCR System (Life Technologies Corp.). The expression levels of miRNA were assessed using a Hairpin‐itTM microRNA qPCR Quantitation Kit (GenePharma) according to the standard protocol. Expression levels are given relative to GAPDH or U6. Sequences of primers are provided in Tables S2 and S3.
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