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27 protocols using gr 1 pe

1

Hematopoietic Progenitor Cell Analysis

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Cells were suspended in Ca++ Mg++-free phosphate-buffered saline (PBS) containing 2% (vol/vol) FBS (Globalstem). Human hematopoietic progenitors cells were identified by labeling with CD45-PE (1:50; clone HI30) and or CD34-APC (1:50; clone 561) while mature phenotypes were analyzed using CD15-Pacific Blue (monocytes and granulocytes) (1:50; clone W6D3/HI98), CD14-FITC (monocytes and macrophages)(clone 1:50; M5E2); CD11b (1:50; ICRF44) (macrophages) and Glycophorin-PECy5 (red blood cell membrane), and erythroid precursors (1:50; Clone HIR2) (all from Biolegend). Murine hematopoietic cells were identified using the following antibodies: Mac-1/CD11b-PECy7 (1:200; clone M1/70), Gr-1-PE (1:200; clone 8C5), B220-PECy5 (1:100; clone RA3-6B2), Sca1-APC (1:100; clone E13-161-7), c-Kit-APCCy7 (1:100; clone 2B8): CD45.1-APC (1:100; clone A20) and CD45.2-FITC (1:100; clone 104) (all from Biolegends). All antibodies were incubated at the concentration suggested by the manufacturer for 30 minutes on ice. Non-specific signals and dead cells were excluded by appropriate fluorochrome-conjugated isotype and propidium iodide staining, respectively. Cell fluorescence was analyzed with the FACSAria II (Becton Dickinson).
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2

Multiparameter Flow Cytometry Analysis

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CD4-PE, CD8-PE, CD69-FITC, B220-FITC, NK1.1-PE, CD3-FITC, Gr-1-PE, CD11b-FITC, CD45-Percp and iso-type controls were purchased from BioLegend (San Diego, CA). Single-cell suspension from the liver, spleen, blood and mesenteric lymph nodes were prepared as described [24 (link)]. All cells were incubated with fluorescence-conjugated mAbs in the presence of 2.4G2 or rat sera, and fluorescence-conjugated isotype mAbs were used as background fluorescence. Flow cytometric analyses were performed on a FACSCalibur flow cytometer (BD Biosciences, San Jose, CA), and data were analyzed using the FlowJo or Cell-Quest software.
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3

Quantifying Lung Immune Cell Populations

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Cell populations from BAL were assessed using fluorescence antibody staining and flow cytometry techniques. A total of 2 × 106 cells were used with viability staining performed with a Live/Dead staining kit (Invitrogen-Molecular Probes, Carlsbad, CA). The cells were washed and resuspended in Dulbecco’s PBS with 1% fetal bovine serum. Cells were divided into two equal sets containing 1 × 106 cells each. Fc receptors (CD16/CD32) were blocked using mouse Fc block antibodies (BioLegend, San Diego, CA) for 10 minutes at 4°C. Diluted fluorescent antibodies specific for the different surface markers or control antibodies were added to the cell suspension and incubated for 10 minutes at 4°C. The cells were washed, formalin fixed, washed again, and resuspended in flow buffer and assayed the same day. The following monoclonal antibodies were obtained from BD Biosciences (San Jose, CA): Gr-1-PE, CD11c-PE; from BioLegend: Ly6C-FITC, F4/80-Alexa Fluor 647, F4/80-Alexa Fluor 700, A-I/b-Alexa Fluor 647, CD11b-PE-Cy7, and CD11c-APC-Cy7. Data were collected using a LSR II BD Biosciences flow cytometer and analyzed using FlowJo software (Tree Star, Inc., Ashland, OR). Forward light scatter low Gr-1+ CD11b+ F4/80− cells were identified as neutrophils and forward light scatter high F4/80+ CD11b+ cells were identified as macrophages.
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4

Isolation and Characterization of Tumor-Infiltrating Immune Cells

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Splenocytes were prepared as described above. 4T1 tumor explants were finely chopped and digested in 1mg/ml collagenase I (Sigma C0130) and 1mg/ml Dispase II (Roche 11629200) for 45 minutes at 37C. 10 uU/ml DNase (Calbiochem 260913) was added and incubated for 5 minutes. Tumor cells were gently pushed through a 70 um cell strainer and gently washed several times in cold PBS. Cells were blocked with Fc block (BD Biosciences). Cells were labeled with antibodies specific for: CD45-APC (Biolegend, San Diego, CA 103111), CD45-PE/Cy7 (Biolegend 103113), CD11b-FITC (BD Biosciences 553310), CD11b-APC (Biolegend 101211), Gr1-PE (Biolegend 108407), Ly6C-FITC (BD Biosciences 553104), Ly6G-PE (Biolegend 127607), CD3-FITC (Biolegend 100203), CD19-PE (Biolegend 115507) and counterstained with DAPI. CD11b+Gr1+ cells, Ly6C, Ly6G, monocytes, B cells and T cells were collected by FACS using BD FACSAria III instrumentation (BD Biosciences). Flow cytometry experiments were performed in the VUMC Flow Cytometry Shared Resource. The VUMC Flow Cytometry Shared Resource is supported by the Vanderbilt-Ingram Cancer Center (P30 CA68485) and the Vanderbilt Digestive Disease Research Center (DK058404). CM was generated as described above using 1 million cells/ml.
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5

Multicolor Flow Cytometry Panel

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The following antibodies were used: mouse lineage cocktail-PE (BioLegend, cat# 78035), mouse lineage cocktail-APC (R&D Systems, cat# FLC001A), c-Kit-FITC (BioLegend, cat# 161603), c-Kit-APC (BioLegend, cat# 135108), c-Kit-PE/Cy7 (BioLegend, cat# 105814), c-Kit-BV421 (BioLegend, cat# 135124), Sca-1-BV605 (BioLegend, cat# 108133), Sca-1-APC (eBioscience, cat# 17-5981-82), Sca-1-BV421 (BioLegend, cat# 108127), Sca-1-PerCP-Cy5.5 (eBioscience, cat# 45-5981-82), CD150-BV421 (BioLegend, cat# 115925), CD150-PE (eBioscience, cat# 12-1501-82), CD150-PE-Cy7 (BioLegend, cat# 115913), CD48-PE/Cy7 (eBioscience, cat# 25-0481-80), CD48-BV711 (BioLegend, cat# 103439), CD48-APC-Cy7 (BioLegend, cat# 103432),CD34-FITC (eBioscience, cat# 11-0341-82), CD135-PE-Cy5 (BioLegend, cat# 135311), CD135-APC (BioLegend, cat# 135310), CD45.1-PerCP-Cy5.5 (BioLegend, cat# 110727), CD45.2-BV421 (BioLegend, cat# 109831), CD45.2-FITC(eBioscience, cat# 11-0454-82), Gr1-PE (BioLegend, cat# 108407), CD11b-APC (BioLegend cat# 101211), CD4-PE (BioLegend,cat# 116005), CD8a-PE (BioLegend, cat# 100707), B220-APC (BioLegend, cat# 103211).
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6

Bone Marrow Macrophage Depletion

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Mice were injected with 250 μL of clodronate or PBS liposomes (ClodLip BV) intravenously at 9 days before tissue collection. BM macrophage depletion was confirmed using F4/80-FITC (Biolegend, 123108), Gr1-PE (Biolegend, 108408), and CD115-APC (Biolegend, 17-1152-82) antibodies.
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7

Hematopoietic Progenitor Cell Analysis

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Cells were suspended in Ca++ Mg++-free phosphate-buffered saline (PBS) containing 2% (vol/vol) FBS (Globalstem). Human hematopoietic progenitors cells were identified by labeling with CD45-PE (1:50; clone HI30) and or CD34-APC (1:50; clone 561) while mature phenotypes were analyzed using CD15-Pacific Blue (monocytes and granulocytes) (1:50; clone W6D3/HI98), CD14-FITC (monocytes and macrophages)(clone 1:50; M5E2); CD11b (1:50; ICRF44) (macrophages) and Glycophorin-PECy5 (red blood cell membrane), and erythroid precursors (1:50; Clone HIR2) (all from Biolegend). Murine hematopoietic cells were identified using the following antibodies: Mac-1/CD11b-PECy7 (1:200; clone M1/70), Gr-1-PE (1:200; clone 8C5), B220-PECy5 (1:100; clone RA3-6B2), Sca1-APC (1:100; clone E13-161-7), c-Kit-APCCy7 (1:100; clone 2B8): CD45.1-APC (1:100; clone A20) and CD45.2-FITC (1:100; clone 104) (all from Biolegends). All antibodies were incubated at the concentration suggested by the manufacturer for 30 minutes on ice. Non-specific signals and dead cells were excluded by appropriate fluorochrome-conjugated isotype and propidium iodide staining, respectively. Cell fluorescence was analyzed with the FACSAria II (Becton Dickinson).
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8

Flow Cytometry Profiling of Hematopoietic Cells

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Suppliers of antibodies and dyes were as follows: eBioscience (Hatfield, Herts, UK): CD71-biotin, Ter119-PE, CD48-APC, CD150-PECy7, CD34-APC, FcγRII/III-PECy7, IL7Rα-PECy7, Flk3-PE, CD44-biotin, streptavidin-APC; Life Technologies (Paisley, Renf, UK): biotinylated lineage cocktail (MLM15), c-kit-APC-Cy7, Mac1-biotin, Gr1-PE; BioLegend (London, UK): Sca-1-PB. Mitochondria were stained with 500 nm Mitotracker DeepRed (Invitrogen) for 30 min at 37 °C in complete media. For cell cycle analysis, Click-IT EdU was used (Invitrogen) or for primary cells, 3 × 105 cells were sorted, fixed in 70% ethanol, and stained in 1× PBS, 50 µg/ml PI, 50 µg/ml RNase A.
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9

Flow Cytometry Analysis of Immune Cells

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Flow-cytometric analysis of at least 105 cells per sample was performed using a BD LSR II Flow Cytometer (BD Biosciences) following protocol as described in Dolgachev et al (2012) (link)17 and using the following antibodies Gr-1-PE,CD11c-APC-Cy7, F4/80-AF488, CD11b-PE-Cy7, CD206-APC, phospho-STAT1 and phospho-STAT6 (BioLegend and BD Biosciences, San Jose, CA, USA). Obtained data were plotted and analyzed using the FlowJo software (Tree Star, Inc., Ashland, OR, USA).
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10

Comprehensive FACS analysis of murine blood

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50 µl of blood was 1:1 diluted in PBS; lymphocytes were separated using 100 µl Lymphocyte Separation Medium 1077 (C-44010, PromoCell, Heidelberg, Germany). Cells were stained for 30 min/4 °C with: CD4-PE/Cy5 (1:1000; 130312), CD8a-PE/Cy7 (1:500; 100722), B220-BV510 (1:300; 103248), Gr-1-PE (1:1000; 108408), CD11b-PerCP/Cy5.5 (1:1000; 101227), F4/80-FITC (1:1000; 123107, all from BioLegend). Filtered samples were acquired on FACSAria Sorp (BD-Biosciences), and data analyzed by FlowJo software (BD-Biosciences).
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